PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010909466.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family FAR1
Protein Properties Length: 838aa    MW: 95915.6 Da    PI: 7.8257
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010909466.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR188.31.1e-2736123190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fYn+YA++vGF vr+s+  ++++n  it+rtfvCs+eg+re++k + ++++ +r+etr+gC a+++++++ +g+++vt+++ +HnH+la
  XP_010909466.1  36 EFYNTYAENVGFFVRRSTLWTTSKNI-ITRRTFVCSREGFREKKKGA-KEAKCPRPETRIGCPACMTIRLTPNGRYRVTEFVPNHNHQLA 123
                     6********************97766.****************9999.999*************************************96 PP
2FAR1865.9e-27165252190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fY+ YA ++GFs+r+++++ s  ++ it+r fvCs+eg+re++k + ++ +++r+etrtgC a++ ++++ +gk++vt++++ HnH+l+
  XP_010909466.1 165 EFYSMYAGRIGFSIRRASMTMSA-ENVITRRMFVCSREGFREKKKGA-KRVKKPRPETRTGCPACMIIRLTPSGKYHVTEFVTYHNHPLS 252
                     6******************9995.555****************9999.99**************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-2436123IPR004330FAR1 DNA binding domain
PfamPF031019.4E-24165252IPR004330FAR1 DNA binding domain
PfamPF105512.4E-31367461IPR018289MULE transposase domain
PfamPF044341.4E-7635681IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.794635682IPR007527Zinc finger, SWIM-type
SMARTSM005752.3E-7657684IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MTDAPRPNST TMEDANNARW LPRIDMLFES ENEAYEFYNT YAENVGFFVR RSTLWTTSKN  60
IITRRTFVCS REGFREKKKG AKEAKCPRPE TRIGCPACMT IRLTPNGRYR VTEFVPNHNH  120
QLAAASTIHM LRAKKMRRKA RAVRADLVDD TVRTPEFETE DEAYEFYSMY AGRIGFSIRR  180
ASMTMSAENV ITRRMFVCSR EGFREKKKGA KRVKKPRPET RTGCPACMII RLTPSGKYHV  240
TEFVTYHNHP LSVPSSTDLV MSHSVENGQD DESDMADGSA DDTVHKQARS HQSISLLSLD  300
SKNYLRSKRV KSIQVGDAGA TLEYLQKMQD NNPSFFYAVQ VDEDDNMTNF FWADAKSMMD  360
YNYFGDVVCF DTTYKIYGYG RPFALFIGVN HHKQIVIFGA ALLYDEGTES FKWLFETFKS  420
VMSGSQPKTV LTDRDAAMSE AIAAVWPGTS HRFCVWHIYQ NAVEQLSQAF HGSRTLGYDF  480
GRCLFDFEDE EEFLSAWKTM LQKYDLQDNQ WLAKLFDERE KWALVYGRET FYADIKSVQQ  540
KENLSTELKK YLSPERELLS FFEHYERILD ERRCAELQAD ANANLSTKKP PSIRMLRQAA  600
NAYTPAAFKM FEREFELYMD CMLYGCGETG TISNYRVTVE EKAKDHFVKF DSLDGTVTCS  660
CKKFEFIGIQ CRHVLKVLDT RNIKELPPQY IVKRWRKDAK AGVLSDNCPF SFDSDPQSSL  720
SKRYNYLCRI FSIAAARAAK SVESYAFIES QSDMLMDQVD QVLQARPSEM PALITTSCDR  780
SQNPVESAVA GTLRYDKANQ ASFIGGTANG LLVSQHSHPT MCWGQFPAGP PEQGGRPL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909461.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLA0A2H3X0R20.0A0A2H3X0R2_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X1
STRINGXP_008776587.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-126FAR1-related sequence 5