PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010909496.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

C2H2

Protein Properties

Length: 156aa MW: 16692.8 Da PI: 7.0544

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010909496.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.4e-05	35	57	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+++F ++ L H++ H XP_010909496.1 35 FPCTYCSRRFFTSQALGGHQNAH 57 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.05E-6	33	62	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.0E-4	33	61	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	4.3E-6	34	59	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.344	35	62	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	37	57	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MAEPSNRYYD FLKPPAAEEP TAAAVGRPPE ALRTFPCTYC SRRFFTSQAL GGHQNAHKKE 60 RAAGSRKAPA SSPSSSSTVV TTDTAILHHP GLPPRPSPSF PWFEPPPPPQ PYFYVYGPPP 120 PSPPPMSAPL ASATEVSSFA SAPADLDLDL DLSLHL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010909496.1	1e-106	zinc finger protein KNUCKLES-like
TrEMBL	A0A2H3YMW3	7e-52	A0A2H3YMW3_PHODC; zinc finger protein KNUCKLES-like
STRING	XP_008801133.1	1e-52	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP183	36	274

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14010.1	2e-14	C2H2 family protein