PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010909527.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bZIP

Protein Properties

Length: 407aa MW: 44583.8 Da PI: 6.1955

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010909527.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.9	3e-10	138	173	5	40
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 k rr+++NReAAr+sR+RKka++++Le +L + XP_010909527.1 138 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLIQ 173 788*************************86555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.9E-7	130	180	No hit	No description
SMART	SM00338	5.7E-7	134	205	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.22	136	180	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-6	138	180	No hit	No description
Pfam	PF00170	2.2E-7	138	167	IPR004827	Basic-leucine zipper domain
CDD	cd14708	2.60E-24	138	190	No hit	No description
PROSITE pattern	PS00036	0	141	156	IPR004827	Basic-leucine zipper domain
Pfam	PF14223	1.4E-10	249	324	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MYSSHLHRGD QPQAGFNLGD AVLDLTRSPI LSPKSSSNLT AVPSSPLQFG ALVHAGMASL 60 DMAASAVGAE LDMGKLAFPR GQIENWGDSG VVVTSLRTDT STDVDADEGN PAIGLSQEGA 120 IVCLDSSTAS REKTGDQKTL RRLAQNREAA RKSRLRKKAY VQQLESSRLK LIQLEQELQR 180 ARQQGIFIAG GFLGDHSYSV GGNAQTTEGL IIESSGVKVG FKKFDGKGSF TMWKVRVEDL 240 LVQMGLDSSL EMQEDEDVVG YIQRFDQMNM DLLNIGVDLE EDKCLLLVCS LSGSFDPLMT 300 MLLYGKETLV YEEIVSVLKS NEQWEWMMKR EIFLEGLAMS ERPRKGKRGE QVGRRWNIAV 360 SLEKSGTTVD VAVKQKGAYN ILQGGAKEQP RFSTVKVVIP KALKGAQ

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MYSSHLHRGD QPQAGFNLGD AVLDLTRSPI LSPKSSSNLT AVPSSPLQFG ALVHAGMASL  60
DMAASAVGAE LDMGKLAFPR GQIENWGDSG VVVTSLRTDT STDVDADEGN PAIGLSQEGA  120
IVCLDSSTAS REKTGDQKTL RRLAQNREAA RKSRLRKKAY VQQLESSRLK LIQLEQELQR  180
ARQQGIFIAG GFLGDHSYSV GGNAQTTEGL IIESSGVKVG FKKFDGKGSF TMWKVRVEDL  240
LVQMGLDSSL EMQEDEDVVG YIQRFDQMNM DLLNIGVDLE EDKCLLLVCS LSGSFDPLMT  300
MLLYGKETLV YEEIVSVLKS NEQWEWMMKR EIFLEGLAMS ERPRKGKRGE QVGRRWNIAV  360
SLEKSGTTVD VAVKQKGAYN ILQGGAKEQP RFSTVKVVIP KALKGAQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019702934.1	1e-141	transcription factor TGA2.2 isoform X1
TrEMBL	M0U0L3	6e-92	M0U0L3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P15550_001	1e-92	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP50700	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.2	6e-24	TGACG motif-binding factor 6