PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010909553.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NF-YB
Protein Properties Length: 156aa    MW: 17288.4 Da    PI: 5.3508
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010909553.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1819.9e-5727119193
           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                     vreqdrflPian+srimkk+lPan+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy+eplk+yl+kyre+
  XP_010909553.1  27 VREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKLYLQKYREA 119
                     69*****************************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.0E-5322119IPR009072Histone-fold
SuperFamilySSF471133.73E-3930119IPR009072Histone-fold
PfamPF008081.6E-283397IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006159.0E-236179No hitNo description
PROSITE patternPS0068506480IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006159.0E-238098No hitNo description
PRINTSPR006159.0E-2399117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MAEAPASPGG GGGSHESGGE QSPRSNVREQ DRFLPIANIS RIMKKALPAN GKIAKDAKET  60
VQECVSEFIS FITSEASDKC QREKRKTING DDLLWAMATL GFEDYIEPLK LYLQKYREAG  120
YYVPDGVTGK EPWSLWKELN CWSTGYFAAK ADDRSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A2e-4928118393NF-YB
4awl_B2e-4928118494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A2e-4928118494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909552.16e-83nuclear transcription factor Y subunit B isoform X2
RefseqXP_019702944.16e-83nuclear transcription factor Y subunit B isoform X3
RefseqXP_019702947.15e-83nuclear transcription factor Y subunit B isoform X4
RefseqXP_026664663.16e-83nuclear transcription factor Y subunit B-like isoform X3
SwissprotQ8VYK44e-70NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A3Q0ICC61e-81A0A3Q0ICC6_PHODC; nuclear transcription factor Y subunit B-like isoform X3
STRINGXP_008805034.13e-82(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.11e-61nuclear factor Y, subunit B3
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]