PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010909612.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family FAR1
Protein Properties Length: 735aa    MW: 85541.8 Da    PI: 6.704
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010909612.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR187.61.8e-2770158289
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                     fY +YA++vGFsvr+sks++s+++++i++r+fvCskeg++ ++ +  + k++r+ra+ r gCka+++v +++ g+w+vtkl++eH+H +
  XP_010909612.1  70 FYMAYASRVGFSVRISKSRRSRNDESIIMRRFVCSKEGFHLKKGNYdDGKKKRKRATIREGCKAMIEVIQKYYGRWVVTKLVKEHSHVV 158
                     9***************************************9998875788999**********************************75 PP

2FAR181.41.6e-25192281290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +Y +YA+++GF+vr++ s++s+r++++++r+fvC+keg++  e++  ++k++r+r+ tr gCka+++v k++ +kw v+kl++eH+H+la
  XP_010909612.1 192 YYYAYASRIGFDVRIRLSRRSTRDETFVMRRFVCTKEGFNPYEDNYdENKKKRNRTPTREGCKAMFEVIKKDYDKWIVSKLVTEHTHDLA 281
                     8***************************************99988857888999*********************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-2570158IPR004330FAR1 DNA binding domain
PfamPF031011.4E-23192281IPR004330FAR1 DNA binding domain
PfamPF105518.8E-28404496IPR018289MULE transposase domain
PROSITE profilePS5096610.831683719IPR007527Zinc finger, SWIM-type
PfamPF044347.0E-7693717IPR007527Zinc finger, SWIM-type
SMARTSM005756.3E-6694721IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MESTSSEDDG SLRDNNMDLN DDNMDHHMTL EVSSHLVEAD NLFSSHQQGA ENLEPFVGME  60
FESEEAAKLF YMAYASRVGF SVRISKSRRS RNDESIIMRR FVCSKEGFHL KKGNYDDGKK  120
KRKRATIREG CKAMIEVIQK YYGRWVVTKL VKEHSHVVAA PNRVRYVVPE EYAQADPYVG  180
MEFPSHEAAQ TYYYAYASRI GFDVRIRLSR RSTRDETFVM RRFVCTKEGF NPYEDNYDEN  240
KKKRNRTPTR EGCKAMFEVI KKDYDKWIVS KLVTEHTHDL AIAPSKVHYI QSQSEVVVLT  300
KSGTVNQEKS ATPSNSKAPL GESFGGFNNL LSNDPDYRSD MKNVGKNAFG VEDTQNLLEY  360
FKRMHAENQT FSYAFQVDKN NCLTHAFWTD AKAKMAYYCF GDAVTFDTSF KEDKNMMPFV  420
MFTGVNHHFQ SVIFGCALIT DETEASYAWL FENWLLAMCG RPPVSLITDF HEAMGSSISK  480
VFPATRHRCC KWHILSKCKE KLANVYLTCA TFEEELEKCV NESETFEIFE SQWKSILDKY  540
DLGENSWMQF LYSIRQKWVP VYLKDTFTAE ISAIQRPESL NKFFEKYFNT KTPVLVFVSL  600
FEQAMAGWYE RENLEDLATS FTRPILKTPS NMLKQVVEYY TRTIFDIFQE EFVESLGYYV  660
DKIQDGEVSK YNVAKEEDAH TTYIVTHDFS QKRTNCSCCK FETSGILCRH ILRVFLTIDV  720
RVLPDYYILK RWTKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909612.10.0protein FAR1-RELATED SEQUENCE 5, partial
TrEMBLA0A2I0XCI60.0A0A2I0XCI6_9ASPA; Protein FAR1-RELATED SEQUENCE 5
STRINGOB03G39100.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-161FAR1-related sequence 5