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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_010909612.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 735aa MW: 85541.8 Da PI: 6.704 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 87.6 | 1.8e-27 | 70 | 158 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89
fY +YA++vGFsvr+sks++s+++++i++r+fvCskeg++ ++ + + k++r+ra+ r gCka+++v +++ g+w+vtkl++eH+H +
XP_010909612.1 70 FYMAYASRVGFSVRISKSRRSRNDESIIMRRFVCSKEGFHLKKGNYdDGKKKRKRATIREGCKAMIEVIQKYYGRWVVTKLVKEHSHVV 158
9***************************************9998875788999**********************************75 PP
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| 2 | FAR1 | 81.4 | 1.6e-25 | 192 | 281 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
+Y +YA+++GF+vr++ s++s+r++++++r+fvC+keg++ e++ ++k++r+r+ tr gCka+++v k++ +kw v+kl++eH+H+la
XP_010909612.1 192 YYYAYASRIGFDVRIRLSRRSTRDETFVMRRFVCTKEGFNPYEDNYdENKKKRNRTPTREGCKAMFEVIKKDYDKWIVSKLVTEHTHDLA 281
8***************************************99988857888999*********************************996 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 1.2E-25 | 70 | 158 | IPR004330 | FAR1 DNA binding domain |
| Pfam | PF03101 | 1.4E-23 | 192 | 281 | IPR004330 | FAR1 DNA binding domain |
| Pfam | PF10551 | 8.8E-28 | 404 | 496 | IPR018289 | MULE transposase domain |
| PROSITE profile | PS50966 | 10.831 | 683 | 719 | IPR007527 | Zinc finger, SWIM-type |
| Pfam | PF04434 | 7.0E-7 | 693 | 717 | IPR007527 | Zinc finger, SWIM-type |
| SMART | SM00575 | 6.3E-6 | 694 | 721 | IPR006564 | Zinc finger, PMZ-type |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0008270 | Molecular Function | zinc ion binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 735 aa Download sequence Send to blast |
MESTSSEDDG SLRDNNMDLN DDNMDHHMTL EVSSHLVEAD NLFSSHQQGA ENLEPFVGME 60 FESEEAAKLF YMAYASRVGF SVRISKSRRS RNDESIIMRR FVCSKEGFHL KKGNYDDGKK 120 KRKRATIREG CKAMIEVIQK YYGRWVVTKL VKEHSHVVAA PNRVRYVVPE EYAQADPYVG 180 MEFPSHEAAQ TYYYAYASRI GFDVRIRLSR RSTRDETFVM RRFVCTKEGF NPYEDNYDEN 240 KKKRNRTPTR EGCKAMFEVI KKDYDKWIVS KLVTEHTHDL AIAPSKVHYI QSQSEVVVLT 300 KSGTVNQEKS ATPSNSKAPL GESFGGFNNL LSNDPDYRSD MKNVGKNAFG VEDTQNLLEY 360 FKRMHAENQT FSYAFQVDKN NCLTHAFWTD AKAKMAYYCF GDAVTFDTSF KEDKNMMPFV 420 MFTGVNHHFQ SVIFGCALIT DETEASYAWL FENWLLAMCG RPPVSLITDF HEAMGSSISK 480 VFPATRHRCC KWHILSKCKE KLANVYLTCA TFEEELEKCV NESETFEIFE SQWKSILDKY 540 DLGENSWMQF LYSIRQKWVP VYLKDTFTAE ISAIQRPESL NKFFEKYFNT KTPVLVFVSL 600 FEQAMAGWYE RENLEDLATS FTRPILKTPS NMLKQVVEYY TRTIFDIFQE EFVESLGYYV 660 DKIQDGEVSK YNVAKEEDAH TTYIVTHDFS QKRTNCSCCK FETSGILCRH ILRVFLTIDV 720 RVLPDYYILK RWTKD |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010909612.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5, partial | ||||
| TrEMBL | A0A2I0XCI6 | 0.0 | A0A2I0XCI6_9ASPA; Protein FAR1-RELATED SEQUENCE 5 | ||||
| STRING | OB03G39100.1 | 0.0 | (Oryza brachyantha) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP18 | 32 | 967 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G38180.1 | 1e-161 | FAR1-related sequence 5 | ||||




