PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010909712.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NAC
Protein Properties Length: 475aa    MW: 53307.9 Da    PI: 4.4392
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010909712.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM224.5e-073155226
             NAM  2 ppGfrFhPtdeelvveyLkkkvegk 26
                    ppGf F+P deel+  yL +k++++
  XP_010909712.1 31 PPGFNFNPDDEELIRLYLDRKIKEN 55
                    9********************9976 PP
2NAM83.54.2e-266013554127
             NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyr 127
                     +e++ yfF++r +ky++g+r+ ra+  gyWkatg++k++++ ++elvg+kktLv+y+g  ++++g+ktdW+m+ey 
  XP_010909712.1  60 GEEKFYFFTSRTRKYPNGSRPARAAGGGYWKATGSEKKIYNDDDELVGVKKTLVYYRGkaKENDGVKTDWIMQEYI 135
                     56789***************************************************7733667899*********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100532.021160IPR003441NAC domain
SuperFamilySSF1019411.27E-3826160IPR003441NAC domain
PfamPF023657.5E-2131134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MEMDPQNIEA VIHQIHGVPE GENSGPSLRF PPGFNFNPDD EELIRLYLDR KIKENYELSG  60
EEKFYFFTSR TRKYPNGSRP ARAAGGGYWK ATGSEKKIYN DDDELVGVKK TLVYYRGKAK  120
ENDGVKTDWI MQEYISEITT CKPGDSMKLD DWVLCCIHKK RGAVDNPHKL QNISQAQSDM  180
PTEQDAKNNQ SYQTYIDSNG GYGNAIMVQR LVAAPDMQIT EFNGSMVPSL AAEPSVQITP  240
SMQLTELNDM VAPSIIAPSD QMIGSNGMLQ QFAVATRMQM TEFNGLFQPS AIAPSGQMID  300
FNRRMPQLGE AYAELMDNHD CMVQKSVISP TEPMTDFNYM APRFAAAPIE QMMGFYDMTQ  360
LSEIADFNAM RQPSPPMTEH NGIMSICNNH STGQGFQQNL SNAMISGKDH VDQFGMAYGE  420
RDEVIDPMKL LCYEPAIEID DVLSDSIEPK ELDADEHSRH DVGCRHAEDF TKLDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-352816415169NO APICAL MERISTEM PROTEIN
1ut4_B2e-352816415169NO APICAL MERISTEM PROTEIN
1ut7_A2e-352816415169NO APICAL MERISTEM PROTEIN
1ut7_B2e-352816415169NO APICAL MERISTEM PROTEIN
3swm_A2e-352816418172NAC domain-containing protein 19
3swm_B2e-352816418172NAC domain-containing protein 19
3swm_C2e-352816418172NAC domain-containing protein 19
3swm_D2e-352816418172NAC domain-containing protein 19
3swp_A2e-352816418172NAC domain-containing protein 19
3swp_B2e-352816418172NAC domain-containing protein 19
3swp_C2e-352816418172NAC domain-containing protein 19
3swp_D2e-352816418172NAC domain-containing protein 19
4dul_A2e-352816415169NAC domain-containing protein 19
4dul_B2e-352816415169NAC domain-containing protein 19
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909712.10.0NAC domain-containing protein 78 isoform X1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.14e-39NAC domain containing protein 32