PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010909817.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 209aa    MW: 24546.7 Da    PI: 9.4671
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010909817.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.4e-172472148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l++ ++++G+g +W + ++++g++R++k+c++rw++yl
   XP_010909817.1 24 KGPWSPEEDSKLKEFIEKYGTGgNWIALSHKVGLKRCGKSCRLRWLNYL 72
                     79*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.7841976IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-202075IPR009057Homeodomain-like
SMARTSM007172.0E-142374IPR001005SANT/Myb domain
PfamPF002492.6E-162472IPR001005SANT/Myb domain
SuperFamilySSF466892.76E-192599IPR009057Homeodomain-like
CDDcd001675.69E-112672No hitNo description
Gene3DG3DSA:1.10.10.604.1E-57698IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MYVGEVFSRK SIQLLSIVEA NVKKGPWSPE EDSKLKEFIE KYGTGGNWIA LSHKVGLKRC  60
GKSCRLRWLN YLRPNIKHGE FSDDEDRIIC SLFASIGSRT IKRRRTRRYY KCLSSGMAQR  120
FDSESNFHAN GHKLLPPVVP DKLEGFHEDH KRHRRYRSME EFSSDLYSPE KYGDHRPRLA  180
KDVRQGQRFT NDDPHDYADE KNFEMDDLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-132499780B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909817.11e-155transcription factor MYB80
TrEMBLA0A061GYH86e-47A0A061GYH8_THECC; Myb domain protein 36, putative
STRINGEOY342871e-47(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-42myb domain protein 36