PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010909934.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family M-type_MADS
Protein Properties Length: 226aa    MW: 24567.3 Da    PI: 9.8516
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010909934.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF711.1e-221561147
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                    krie++  rqv fskRr+g++KKA+ELS+LC+ae+ vi+fs+ gk +
  XP_010909934.1 15 KRIESEEARQVCFSKRRAGLFKKANELSILCGAEIGVIVFSPAGKPF 61
                    79*****************************************9855 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.787767IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-29783IPR002100Transcription factor, MADS-box
SMARTSM004322.8E-35766IPR002100Transcription factor, MADS-box
CDDcd002655.34E-41879No hitNo description
PRINTSPR004041.3E-20929IPR002100Transcription factor, MADS-box
PfamPF003198.2E-271663IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-202944IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-204465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MVRKPSMGRQ KIDIKRIESE EARQVCFSKR RAGLFKKANE LSILCGAEIG VIVFSPAGKP  60
FSFGHPSVDS IIDRFLSGSP SPMTLPSADP RMPAAREMMV VHEFNQQYTV LTALLETERR  120
KKAVLEEAVR VKRAGEAALW GANIEELGLG ELESLYNSFE RLRRDVAMRA DQLVIEAAHT  180
RSSSVAAAGS TVPPPPPGVN LGFGRGVEGS MALPPPTSFG YGRGPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A4e-17779173MEF2 CHIMERA
6bz1_B4e-17779173MEF2 CHIMERA
6bz1_C4e-17779173MEF2 CHIMERA
6bz1_D4e-17779173MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909934.11e-164agamous-like MADS-box protein AGL62
TrEMBLA0A2H3XTF61e-125A0A2H3XTF6_PHODC; agamous-like MADS-box protein AGL62
STRINGXP_008788342.11e-126(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-35AGAMOUS-like 62