PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010910017.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

C2H2

Protein Properties

Length: 379aa MW: 41032.6 Da PI: 8.0145

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010910017.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00017	141	163	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp Cg++ s +++L H+ tH XP_010910017.1 141 FPCPACGEVLSKPHLLDLHQATH 163 89********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.974	141	168	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	143	164	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	6.14E-13	177	378	No hit	No description
Gene3D	G3DSA:3.90.228.10	4.3E-4	189	279	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain
Gene3D	G3DSA:3.90.228.10	7.7E-6	310	378	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MATVPSFFNG FLSLFLLLTL HLGCCGLSPT PNPDTDQQQS PPKRRKISPL SPSPPSSASA 60 PKPRKSFSLS LRSYLSRLFP SSSHTPKEDR SPHRPIPQQS PTIAKPIPLS PDVSDDKALS 120 VSEPEISAPV HTSFAFRCDV FPCPACGEVL SKPHLLDLHQ ATHHSLSELS DADADSGNNV 180 VRIIFHSGWK GISSPTIHRI LKIHNAPRTL ARFEEYRDTV RSRASRRGGD ERCIADGNER 240 LRFYCSTILC SLGRDGVCGS PYCSACGIVR HGFAGKQAEL DGIATHATSW AAHLSLPEDL 300 EREFAYLHVR RAMLVCRVVV GRVARGGGGA AAAAAEEEEE KGTSLFDSVV PAGRGGGDEE 360 LLVFHPRAVL PCFVIIYTA

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MATVPSFFNG FLSLFLLLTL HLGCCGLSPT PNPDTDQQQS PPKRRKISPL SPSPPSSASA  60
PKPRKSFSLS LRSYLSRLFP SSSHTPKEDR SPHRPIPQQS PTIAKPIPLS PDVSDDKALS  120
VSEPEISAPV HTSFAFRCDV FPCPACGEVL SKPHLLDLHQ ATHHSLSELS DADADSGNNV  180
VRIIFHSGWK GISSPTIHRI LKIHNAPRTL ARFEEYRDTV RSRASRRGGD ERCIADGNER  240
LRFYCSTILC SLGRDGVCGS PYCSACGIVR HGFAGKQAEL DGIATHATSW AAHLSLPEDL  300
EREFAYLHVR RAMLVCRVVV GRVARGGGGA AAAAAEEEEE KGTSLFDSVV PAGRGGGDEE  360
LLVFHPRAVL PCFVIIYTA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010910017.1	0.0	uncharacterized protein LOC105035988
TrEMBL	A0A3Q0I901	0.0	A0A3Q0I901_PHODC; uncharacterized protein LOC103715055
STRING	XP_008800782.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10517	30	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29660.1	5e-63	C2H2 family protein