PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010910253.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 301aa    MW: 34309.3 Da    PI: 8.2889
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010910253.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2188.2e-06132151120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++C+ C+ksFsr  n++ H+
  XP_010910253.1 132 FSCTVCNKSFSRYNNMQMHM 151
                     89*****************9 PP
2zf-C2H214.30.00012216238123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k+F  + + ++H +++
  XP_010910253.1 216 FKCRKCSKPFAVRGDWRTHEKNC 238
                     89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.21E-6115155No hitNo description
PROSITE profilePS5015711.053132159IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-6132151IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.088132154IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280134154IPR007087Zinc finger, C2H2
SMARTSM00355230179211IPR015880Zinc finger, C2H2-like
SMARTSM0035567216236IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGQRKHSMDQ DSSLCFQSPP FFEWLKAPSS SSLASPLAPE CLPLLSRFEE PEKTIEEEEV  60
IIAKDISQEK ITVALNIGLP GASEELDGGM EPLNCKKEEE EEMESSQDLD SGNGKKFWIP  120
TPAQILIGPV QFSCTVCNKS FSRYNNMQMH MWGHGSEYRK GPDSLKGTQP IAMLKLPCYC  180
CAHGCKNNIN HPRAKPLKDF RTLQTHYKRK HGLKTFKCRK CSKPFAVRGD WRTHEKNCGK  240
LWFCTCGSDF KHKRSLNDHI RSFGKGHSHY LPPKFPEVEK ECIIRFDDEV FTGKHRSIAL  300
N
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010910253.10.0zinc finger protein WIP3-like
SwissprotQ9SGD12e-99ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A2H3ZHY30.0A0A2H3ZHY3_PHODC; zinc finger protein WIP3-like
STRINGXP_008813791.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44723667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-96C2H2 family protein
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]