PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010910379.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NF-YA
Protein Properties Length: 284aa    MW: 31211.3 Da    PI: 9.3169
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010910379.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.34.6e-32107163158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RRq+Rak+e ekk  +k rkpylheSRh+hAlrR+Rg+gGrF
  XP_010910379.1 107 EEPVYVNAKQYHGILRRRQSRAKAELEKKA-IKVRKPYLHESRHQHALRRARGCGGRF 163
                     69***************************9.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.4E-36105166IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.01106166IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.6E-27108163IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.1E-24109131IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860111131IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.1E-24140163IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MILKWVLVLR YDILLLTKAL LVWSEGSFGQ EPQHLQPVSP AMPPMMPEYF APHTQLELGQ  60
SLACATYSYS DPYFAGFMAP YGTQALVHPQ MLGMPHTRMP LPLEMTEEPV YVNAKQYHGI  120
LRRRQSRAKA ELEKKAIKVR KPYLHESRHQ HALRRARGCG GRFLNTKKAD GNAATASPEN  180
GANTGASLQR QSASSSGSEA LPSDCSGNPD SGSNMNEIKR PAVQGLCEAR VYNNKNGGHQ  240
QQSGFQLSSF HSKSSGRVEE GDCSGQQHGG ILVNQPPNWA VTIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-20107170265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029118011.10.0nuclear transcription factor Y subunit A-9 isoform X3
TrEMBLA0A2H3XYY81e-141A0A2H3XYY8_PHODC; nuclear transcription factor Y subunit A-1
STRINGXP_008790783.11e-141(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.13e-47nuclear factor Y, subunit A9