PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010910571.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family B3
Protein Properties Length: 192aa    MW: 21494.4 Da    PI: 7.4067
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010910571.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.18.7e-1582171398
                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      v+t+s v +  +l++pk+    + +++++     + + ++++We+++  +++ +r  + +GWk+F+ +n+Lk gD +v++l++++  ++ v+++
  XP_010910571.1  82 CVMTKSQVQAPFQLTIPKNIW--MLLPSAC--VPAVLSYRNKTWEMRYYGDRNLRR--FDSGWKHFAVDNNLKIGDACVLELMDDQHLKFQVQIL 170
                     578899999999999999987..2334334..456778899*******55777777..8************************9999999**999 PP

                     - CS
              B3  98 r 98 
                     r
  XP_010910571.1 171 R 171
                     8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-1776171IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-1776170IPR015300DNA-binding pseudobarrel domain
CDDcd100171.74E-1678171No hitNo description
SMARTSM010197.0E-480173IPR003340B3 DNA binding domain
PfamPF023622.7E-1380172IPR003340B3 DNA binding domain
PROSITE profilePS5086311.43480173IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MTDHSVCSSN THRRHCKAPV AARSLSSQES TNGANLCLPS KSSKNGDNKV EHCAPFSSPS  60
DSATVDEKDE IVPLSGKPYF ACVMTKSQVQ APFQLTIPKN IWMLLPSACV PAVLSYRNKT  120
WEMRYYGDRN LRRFDSGWKH FAVDNNLKIG DACVLELMDD QHLKFQVQIL RGDIPREIVE  180
SGCSFDTPIM IE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010910571.21e-144B3 domain-containing protein Os04g0386900 isoform X1
TrEMBLA0A2H3YR231e-125A0A2H3YR23_PHODC; B3 domain-containing protein Os04g0386900-like
STRINGXP_008802551.11e-125(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89543545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-09B3 family protein