PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010910572.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 245aa    MW: 26978.6 Da    PI: 5.152
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010910572.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.71.3e-181355145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     ++ W++eEd++l++a+ + G++ W+ Ia++++ gRt++++k++w+
   XP_010910572.1 13 KDTWSEEEDKILIQAHSEVGNK-WAEIAKRLP-GRTENSIKNHWN 55
                     679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.38E-16864IPR009057Homeodomain-like
PROSITE profilePS5129423.058862IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-201160IPR009057Homeodomain-like
SMARTSM007171.5E-171260IPR001005SANT/Myb domain
PfamPF002491.8E-171355IPR001005SANT/Myb domain
CDDcd001671.56E-151558No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDSASSFDSW VQKDTWSEEE DKILIQAHSE VGNKWAEIAK RLPGRTENSI KNHWNATKRR  60
QFSRRRCRSS KYPKSVSLLQ NYIKSLALQG GIVPTVPAAS AAAPRLPADD RLIKSTESND  120
GGSEQASMAL LTCIPLEGLS VDVGAYVCGG SDDILPACHL SDMANLLLDN NKVDHVPPER  180
YYDMGYLFDQ LGCGPGIVKM GCLDMEMAWD EMPIPCDANM KVKKEMDLVE MIAQNKNNTG  240
GGQQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1idy_A2e-201161353MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
1idz_A2e-201161353MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010910572.21e-172uncharacterized protein LOC105036507
TrEMBLA0A2H3ZFG61e-112A0A2H3ZFG6_PHODC; transcription factor MYB13-like
STRINGXP_008812703.11e-113(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-28myb domain protein 98