PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010910776.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TALE
Protein Properties Length: 162aa    MW: 18776.4 Da    PI: 10.1283
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010910776.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.49.9e-081121442254
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +yp+++++++L +++gL+ +q+ +WF N+R +
  XP_010910776.1 112 WPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 144
                     58*****************************87 PP
2ELK29.81.3e-106586122
             ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                    ELK qL++++++++g++++E++
  XP_010910776.1 65 ELKIQLKQGFKSRIGDVREEIL 86
                    9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037894.4E-76586IPR005539ELK domain
PROSITE profilePS512139.2896585IPR005539ELK domain
SMARTSM011880.00226586IPR005539ELK domain
PROSITE profilePS5007111.38685148IPR001356Homeobox domain
SMARTSM003892.2E-1087152IPR001356Homeobox domain
SuperFamilySSF466892.57E-1687151IPR009057Homeodomain-like
CDDcd000869.39E-1188149No hitNo description
Gene3DG3DSA:1.10.10.604.4E-2592151IPR009057Homeodomain-like
PfamPF059201.2E-18105144IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MHMIWRTLSG LTLEEGTGAT MSDDEDELQL DGPLGMTVDG HDMMGFGPLL PTESERSLME  60
RVRQELKIQL KQGFKSRIGD VREEILRKRR AGKLPGDTTS VLKQWWLSHS KWPYPTEDDK  120
AKLVEETGLQ LKQINNWFIN QRKRNWHSNS QSATTLKSKR KR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-1388144864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141161RKRNWHSNSQSATTLKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010910776.11e-116homeobox protein knotted-1-like 1
SwissprotQ94LW32e-91KNOS3_ORYSJ; Homeobox protein knotted-1-like 3
TrEMBLA0A2H3Z2161e-96A0A2H3Z216_PHODC; homeobox protein knotted-1-like 3
STRINGXP_008807225.12e-97(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.15e-88KNOTTED-like homeobox of Arabidopsis thaliana 7