PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010910911.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

C2H2

Protein Properties

Length: 183aa MW: 20403.5 Da PI: 8.3024

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010910911.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00058	58	80	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H XP_010910911.1 58 YECKTCNRRFPTFQALGGHRTSH 80 99**********99998888877 PP
2	zf-C2H2	11	0.0013	103	125	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp Cg F+ L H+r+H XP_010910911.1 103 HECPVCGLEFPIGQALGGHMRRH 125 79*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.3E-9	56	125	No hit	No description
Pfam	PF13912	2.8E-12	58	82	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.096	58	80	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.201	58	85	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	60	80	IPR007087	Zinc finger, C2H2
Pfam	PF13912	3.7E-10	102	126	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.14	103	125	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.663	103	130	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	105	125	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MHTCRLLDQE FMAKFSTAGR EEGEMESPNM ANLLLLLSCS GAKAQKINGI KKPVGRMYEC 60 KTCNRRFPTF QALGGHRTSH MRPRGRRNPV EQTKKEISKP RTHECPVCGL EFPIGQALGG 120 HMRRHKPVEA GEIHAEEEKA GEGKLDLNLT PLENDLELTT LRLGLELVKE ASIIDFFSCS 180 GST

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010910911.3	1e-132	zinc finger protein ZAT8, partial
TrEMBL	A0A2H3YAC2	9e-83	A0A2H3YAC2_PHODC; zinc finger protein ZAT11-like
STRING	XP_008795823.1	2e-83	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP501	37	157

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28710.1	1e-31	C2H2 family protein