PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010910974.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ERF
Protein Properties Length: 226aa    MW: 23816.5 Da    PI: 5.7146
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010910974.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.4e-184898155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++ +g
  XP_010910974.1 48 PVYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSVKG 98
                    68*****998.**********843...6**********************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.6E-134898IPR001471AP2/ERF domain
SMARTSM003803.2E-3349112IPR001471AP2/ERF domain
PROSITE profilePS5103223.23549106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-3149107IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-2149107IPR016177DNA-binding domain
CDDcd000184.81E-2950108No hitNo description
PRINTSPR003673.0E-105061IPR001471AP2/ERF domain
PRINTSPR003673.0E-107288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MAASETETSR NSMSCSSSSN SSPSPSPKKN GLTGGGGEKR ARDGTKHPVY RGVRMRAWGK  60
WVSEIREPRK KSRIWLGTFP TPEMAARAHD VAALSVKGAA AVLNFPDLAA SFPRPATLSP  120
RDVQAAAARA ATMDLPSATT AARPDESSDE LGEIVELPRL GEGFFHSAES GGGEFVLHDS  180
PDLWVYSPPW MEGADENGFF SDSAWAAGGP SEGALPTGLG ALLRDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1944106972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010910974.11e-162ethylene-responsive transcription factor TINY
SwissprotQ9LYD33e-65DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A2H3WXH51e-119A0A2H3WXH5_PHODC; ethylene-responsive transcription factor TINY-like
STRINGXP_008775170.11e-120(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-63ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]