PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010911440.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family LBD
Protein Properties Length: 206aa    MW: 21336 Da    PI: 8.5014
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010911440.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601231.5e-38311321101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++C +ap+f  eq +++fa+vhk+FGasnv+kll+++p  +r da+ +++yeA+ar+ dPvyG+v++il+lqqq++ l+ae+
  XP_010911440.1  31 PCGACKFLRRKCVSGCLFAPHFGTEQgAARFAAVHKVFGASNVSKLLAHVPAGRRGDAVLTICYEAQARLADPVYGCVSTILSLQQQVAALQAEI 125
                     7*********************999989******************************************************************* PP

          DUF260  95 allkeel 101
                     + ++++l
  XP_010911440.1 126 SIVRSQL 132
                     *999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.51730132IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-3831129IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MDSKGGGGGG GGGGPRGDAG KRAASAGQSA PCGACKFLRR KCVSGCLFAP HFGTEQGAAR  60
FAAVHKVFGA SNVSKLLAHV PAGRRGDAVL TICYEAQARL ADPVYGCVST ILSLQQQVAA  120
LQAEISIVRS QLINTRLAVA GALHQGSQQV QHIAVLQPAY SSNSWTCHNM VDLSSFASGL  180
DLGDTKPTSR GFEPLQRSQP SNDEEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-37251335112LOB family transfactor Ramosa2.1
5ly0_B6e-37251335112LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010911440.11e-150LOB domain-containing protein 20, partial
SwissprotQ9SRV35e-64LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A2H3X1V61e-117A0A2H3X1V6_PHODC; LOB domain-containing protein 20
STRINGXP_008777051.11e-118(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140852526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.13e-57LOB domain-containing protein 20