PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010911448.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NAC
Protein Properties Length: 511aa    MW: 56685.5 Da    PI: 4.4215
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010911448.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM88.41.3e-2741352128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkya...tgkrknratksgyWkatgkdke 91 
                       G rF+P+d el++ +L+kk+ g++l+  ++i e+d+y  +P++L +  ++++++ ewyfF+++ +k++    ++r++r + +g+Wkat + k+
  XP_010911448.1   4 LTGWRFQPSDVELLDSFLRKKILGQPLSY-HMILEADVYGDDPKNLTArySMANRDGEWYFFTSTVRKHPgasDSSRASRRAGAGRWKATQRIKT 97 
                     68*************************99.88**************85235666777***********995444667777788************ PP

             NAM  92 vlskkgelvglkktLvfykgrapkg.ektdWvmheyrl 128
                     vl++++++ g k+ + + +   + g +kt W+m+e+++
  XP_010911448.1  98 VLDSDHNVLGSKQCFCYMESCPSGGeTKTIWLMEEFSI 135
                     ******************7754444259********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.19E-352164IPR003441NAC domain
PROSITE profilePS5100536.5933164IPR003441NAC domain
PfamPF023655.7E-155135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MALLTGWRFQ PSDVELLDSF LRKKILGQPL SYHMILEADV YGDDPKNLTA RYSMANRDGE  60
WYFFTSTVRK HPGASDSSRA SRRAGAGRWK ATQRIKTVLD SDHNVLGSKQ CFCYMESCPS  120
GGETKTIWLM EEFSIPHLRR KAGASAISGS NKLDEWVICK IYLTPKARKV HMIQEDLYEI  180
QPVEPVAKRR RMEEPQTMSS LCMHPYQDIA GHYQTLQLPD DSLPQLIDVS GAPIDGGSPI  240
QHTSEDPSIL SQDITDSFQT HQLASDTLLH SDRVVPVLVE AMSSPCMHPC QDIAVHCQSL  300
QLPDDALPQL VDMFDASIDG YSPTQHTSEE PSIPRQDIAD SFQIHQPADD TISCSDPVVL  360
VLMETTSTLC MHPSQDIAGH RQILQLPDDA LPQLIDVSDA SIDGCSPTQH ASEAASIPSQ  420
DIADSFQIHQ PAGNTSSHFD PATPVVVDMM EGPEHVFGQA DFDQILKYAE DSSIAFSPEI  480
MQAHGEETEE IDALLWSFHY DPSMPSIDDI L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-23116215163NO APICAL MERISTEM PROTEIN
1ut4_B2e-23116215163NO APICAL MERISTEM PROTEIN
1ut7_A2e-23116215163NO APICAL MERISTEM PROTEIN
1ut7_B2e-23116215163NO APICAL MERISTEM PROTEIN
4dul_A2e-23116215163NAC domain-containing protein 19
4dul_B2e-23116215163NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029118174.10.0uncharacterized protein LOC114913757
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2291725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.19e-24NAC-like, activated by AP3/PI