PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010911550.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 218aa    MW: 24471.6 Da    PI: 6.312
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010911550.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH277.9e-09113155754
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++ r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  XP_010911550.1 113 IAARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 155
                     56799*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.135106155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-15111166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-14112161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-13113164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-6114155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.07E-6129160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MDNSTNNTST SSSWDLERTM GNHLLFNHAP FELVQPIDPF QAHVPSSSLP AAQMEIQRQV  60
EGGEHEEDEE EKLGAMKEMM YRIAAMQPVD IDPSTIKKPK RRNVRISDDP QSIAARHRRE  120
RISERIRILQ RLVPGGTKMD TASMLDEAIR YVKFLKRQVQ ELQSSSPPPH MAQVIAGNQA  180
SSMDWPVKLD PHASSSSTMG APLELGFGFD GPSDHRMN
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010911550.21e-146transcription factor HEC3-like
SwissprotQ9LXD81e-44HEC3_ARATH; Transcription factor HEC3
TrEMBLA0A2H3YTL51e-118A0A2H3YTL5_PHODC; transcription factor HEC3-like
STRINGXP_008803692.11e-119(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90513246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.13e-41bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]