PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010911783.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TALE
Protein Properties Length: 231aa    MW: 26133.3 Da    PI: 4.9682
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010911783.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.21.9e-101641972255
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      +yp++ee+++LA+ +gL+ +q+ +WF N+R ++
  XP_010911783.1 164 WPYPTEEEKAKLAEMTGLDPKQINNWFINQRKRH 197
                     58*****************************885 PP
2ELK35.71.9e-12117138122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK++Ll+KYsgyL++L++EF+
  XP_010911783.1 117 ELKEMLLKKYSGYLSNLRKEFL 138
                     9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012563.0E-251768IPR005541KNOX2
PfamPF037914.0E-242067IPR005541KNOX2
PROSITE profilePS5121311.261117137IPR005539ELK domain
SMARTSM011881.9E-6117138IPR005539ELK domain
PfamPF037897.0E-10117138IPR005539ELK domain
PROSITE profilePS5007113.054137200IPR001356Homeobox domain
SMARTSM003898.0E-15139204IPR001356Homeobox domain
SuperFamilySSF466899.41E-21139209IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-27142203IPR009057Homeodomain-like
CDDcd000861.56E-13149201No hitNo description
PfamPF059203.0E-17157196IPR008422Homeobox KN domain
PROSITE patternPS000270175198IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MASLLEEIGR RRYTSAGCGE IGADPELDEF MESYCRVLQR YKEELSKPFD EAASFLNSIE  60
VQLSNLCKGC TTSSSTTTAT GNSPSDEVVG SSEEELSCGD VDASESQESG SRLADHELKE  120
MLLKKYSGYL SNLRKEFLKK RKKGKLPKDA RLTLLDWWQT HYRWPYPTEE EKAKLAEMTG  180
LDPKQINNWF INQRKRHWKP SEDMQFALME GVGGGGSNET MLYFDRGTIG P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132141LRKEFLKKRK
2138142KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010911783.21e-171homeobox protein knotted-1-like 1
RefseqXP_010938260.11e-171homeobox protein knotted-1-like 1
SwissprotQ9FP292e-99KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLD6PAL41e-139D6PAL4_COCNU; KNOTTED-like homebox protein 2
STRINGXP_008781110.11e-140(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.12e-61KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]