PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010911852.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 219aa    MW: 24534.7 Da    PI: 6.6789
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010911852.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.1e-08110152754
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++ r RR++i +++  L++l+P       +K++ a++L +A++Y+k L
  XP_010911852.1 110 IAARHRREKISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 152
                     56799*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.05E-1294157No hitNo description
PROSITE profilePS5088814.919103152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-14108162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-14109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-13110161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-6111152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MNNMTYNTTN CSSWDLEMNM GSHLHFDHSP FELFQPIDPF QPHVPSPSFP SAQMEIERKV  60
EGGEYEEEGL GAMKEMLYKI AAMQPVDIDP STIKKPRRRN VRISDDPQSI AARHRREKIS  120
ERIRILQRLV PGGTKMDTAS MLDEAIHYVK FLKRQVQELQ SPQIPQVITG HPASSMGWPV  180
RLDPHASSSS SSSMGTPPGL GFGFDGPDDH QIHGGCRGN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010911852.21e-148transcription factor HEC3-like
TrEMBLA0A3Q0I8A11e-119A0A3Q0I8A1_PHODC; transcription factor HEC3-like
STRINGXP_008799041.11e-120(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90513246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.13e-44bHLH family protein