PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010911884.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 535aa    MW: 58865.6 Da    PI: 6.6005
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010911884.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.41.4e-06294315223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      C +Cgk F+r  nL+ H+r H
  XP_010911884.1 294 FCVICGKGFKRDANLRMHMRGH 315
                     6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.03E-5291318No hitNo description
SMARTSM003550.015293315IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.614293320IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-5294344IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280295315IPR007087Zinc finger, C2H2
SMARTSM0035571342375IPR015880Zinc finger, C2H2-like
SMARTSM0035526380402IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MDPKLRINSE ALAKSSCQMM GDTSRNFNLG QPFIQFNPIN LCYGGGPEQT FPEFPPTLGT  60
EARSLYQPEP EVKSANQFKP SPNVNNTILD WNPRLILSNL SFLEQKIHQV QAIVQSIINQ  120
ESQFSNRANE MFAQQQLVTA DLTSIIIQLI STAGSLLPSI KNTLVSTNPS AGQLGSFIGA  180
PTSFGLNVSQ QQNAVIPMEV PKASACDKLI DGLNKDSCRK EGSELIKGLH GHGNEDVELI  240
KCLKSDSEGT ELASLEDHDV KDSDDGVDGE NLPPGSYEVL QLEKEEILAP HTHFCVICGK  300
GFKRDANLRM HMRGHGDEYK TPAALAKPNK ESTSEPALIK RYSCPFVGCK RNKEHKKFQP  360
LKTILCVKNH YKRSHCDKSY ICSRCNTKKF SVIADLKTHE KHCGRDKWLC SCGTTFSRKD  420
KLFGHVSLFQ GHTPVLAVDD AKVLGTFDQA RPNEVMNDMV GTLEYNFAGR TLDDVQSLNI  480
KGVDVGTGCF SPMNFDACNF GGLDEFLHPA SEVSEGPFSF LPFGSSNLIQ GSGQN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010911884.10.0zinc finger protein STOP1 homolog
RefseqXP_010911885.10.0zinc finger protein STOP1 homolog
SwissprotQ943I60.0STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A2H3XGG30.0A0A2H3XGG3_PHODC; zinc finger protein STOP1 homolog
STRINGXP_008783403.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-155C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]