PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010912197.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family Trihelix
Protein Properties Length: 541aa    MW: 60074.3 Da    PI: 6.1893
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010912197.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix70.53.1e-22125247186
        trihelix   1 rWtkqevlaLiearremeerlrrgk....................................lkkplWeevskkmrergferspkqCkekwenlnk 59 
                     +Wt+++v++Li ++ +++++ + g                                     +kk++W++vs++m+e+gf +sp+qC++k+++lnk
  XP_010912197.1 125 KWTDSMVRLLISVVYRVGDDGGGGGegephqphaavsassaakgkkgpaasasatsasallQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNK 219
                     7***********9998877777543355777888888888889999999999999999************************************* PP

        trihelix  60 rykkikegekkr.tsessstcpyfdqle 86 
                     ryk++++  +k+ +++++++ +++d +e
  XP_010912197.1 220 RYKRVNDLLGKGtACRVVENQALLDTME 247
                     ************55***********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-17123273No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MEGGGGMPGG MLPSSIGSTG LLGLEMPLHQ QQQPQPQKFL HPHQQQQQHP IFPFQTPQSG  60
SDAADHQMRH ASSSSSYTPY GARGRQQQLT LSSEDELQPG FGDEGDGARR VSSQSPTPSP  120
WQRMKWTDSM VRLLISVVYR VGDDGGGGGE GEPHQPHAAV SASSAAKGKK GPAASASATS  180
ASALLQKKGK WKSVSRAMME KGFYVSPQQC EDKFNDLNKR YKRVNDLLGK GTACRVVENQ  240
ALLDTMEHLS PKAKEEARKL LNSKHLFFRE MCAYHHATAA AAATPAQQMQ QPPPPPHADQ  300
QQQQLCFHHP PTSVSVGGKR GAAMVEEDGM VTHEEDEDDD DDIDSEEEEE EEDDDDEHEE  360
DEDETDYHHN NKHRAHHGGG HHQQGKREEA DEDEDSRGLV GGPGQTEGAK RTRRMFSGAS  420
PPLSLSLSSP SSTSTSLQRL KSELMGMAGD GEQQQRQWLK GRAAELEEQR VGYQSRALQL  480
ERQRFKWLRF STKKERDMER LKLHNDRLRL ENERMLLLLR QKELEFLRCG VGGGADNHLQ  540
Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1492501KKERDMERLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010912197.10.0la-related protein Larp4B
TrEMBLA0A2H3X3T80.0A0A2H3X3T8_PHODC; la-related protein CG11505-like
STRINGXP_008777881.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.16e-48sequence-specific DNA binding transcription factors