PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010912228.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 319aa    MW: 34413.4 Da    PI: 4.3216
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010912228.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00035293315223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +C+ C+k+F +   L+ H +  H
  XP_010912228.1 293 SCKSCSKTFGSENALQAHTKAkH 315
                     6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.884292319IPR007087Zinc finger, C2H2
PROSITE patternPS000280294315IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEFWGVEVKP GQTVKCDPGD IKYLHLSQAS LGETKKDKAA ENVPLFVKFN DQKLVLGTLS  60
AEKCAQISFD LVFEKEFELS HSSKNASVYF CGYKAIVQDA FGSDDDLSDD ESDSEDDLQI  120
GQKQNGKLNV KGEQGKSATG KVGNKVDAPP AKPKAKVEEP VKADKLKAAE DDEDDEDEED  180
DEDEEEDDSE DVSDEDEDMA EALGDSDDED EDEDSEEEDK VTPKKAETGK KRAADSASKT  240
PGLVKKAKIE KTGAADGKKG QTATPTPGKK FEKTPAESDK SKQQTPKSSG SVSCKSCSKT  300
FGSENALQAH TKAKHSGGK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010912228.10.0histone deacetylase HDT2
TrEMBLA0A2H3YVT31e-146A0A2H3YVT3_PHODC; histone deacetylase HDT2-like
STRINGXP_008804388.11e-147(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22043065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.22e-29histone deacetylase 3