PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010912244.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Nin-like

Protein Properties

Length: 113aa MW: 13470.9 Da PI: 11.0523

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010912244.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	69.5	4.7e-22	1	37	16	52
RWP-RK 16 lpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +pi+ AAke++v+lT+LKr+CR++GI+RWPhRkiksl XP_010912244.1 1 MPITRAAKEMNVGLTLLKRRCRELGIPRWPHRKIKSL 37 79*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02042	9.7E-18	1	37	IPR003035	RWP-RK domain
PROSITE profile	PS51519	15.812	1	59	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 113 aa Download sequence Send to blast
MPITRAAKEM NVGLTLLKRR CRELGIPRWP HRKIKSLRAL IHNVQELGKG PNRESIRREL 60 ETLEEHRRLM EENPLIELTE GTKKLRQACF KAHFKKRRAL QKHCFDLSNK YYA

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010912244.2	1e-76	protein RKD4
Swissprot	Q9LVU8	1e-35	RKD4_ARATH; Protein RKD4
TrEMBL	A0A2H3ZY12	1e-62	A0A2H3ZY12_PHODC; protein RKD1-like
STRING	XP_008807243.1	7e-57	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4590	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	2e-29	RWP-RK domain-containing protein

Publications ? help Back to Top
Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER Gene regulatory network models for floral organ determination. Methods Mol. Biol., 2014. 1110: p. 441-69 [PMID:24395275]