PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010912287.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bZIP

Protein Properties

Length: 486aa MW: 53756.4 Da PI: 6.7953

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010912287.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.9	1.4e-10	175	216	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L XP_010912287.1 175 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDL 216 5889*************************9777777666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.1E-6	172	236	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.186	174	218	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.9E-8	175	217	IPR004827	Basic-leucine zipper domain
CDD	cd14708	4.98E-23	176	228	No hit	No description
SuperFamily	SSF57959	8.13E-7	176	218	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.2E-7	177	220	No hit	No description
PROSITE pattern	PS00036	0	179	194	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.8E-29	256	328	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence Send to blast
MANHRVGETG LSESGPSSQP LAYGVHGIPP AATNFFDQEG AAYFGELEAA LMHGVAGIRS 60 DEDRKPFFTT RPPTLEIFPS WPMRFQQTPK GNSQPVESTD SGSAQNTISQ LDSDSPVSIK 120 ASSEQCSEQN QQQQGMIACD VPATGAAAPN HQPRTQEKRR MAGATAEKDG KILDAKTLRR 180 LAQNREAARK SRLRKKAYVQ QLESSRIKLT QLEQDLQRAR SQGLFFGGAS AGENISSAAA 240 IFDMEYDRWL DENYKHMTNL RGGLQAHLPE GDLRVIVDEC LTHYDEMFRL KGVAARADVF 300 HLITGMWTTP AERCFLWMGG FKPSELLKEI LIPQLDPLTE QQLVGICSLQ QSSQQAEEAL 360 SQGLEKLHQS LRDTVSSGSL CEGTNVGNYM DQMGVALGKL ANLEGFVRQA DNLRQQTLHQ 420 LHRILTVRQA ARSFLAIGEY HGRLRALSSL WASRPRENLI TDGSAYPTTT DLQIIHQPVH 480 SHFSAF

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence Send to blast

MANHRVGETG LSESGPSSQP LAYGVHGIPP AATNFFDQEG AAYFGELEAA LMHGVAGIRS  60
DEDRKPFFTT RPPTLEIFPS WPMRFQQTPK GNSQPVESTD SGSAQNTISQ LDSDSPVSIK  120
ASSEQCSEQN QQQQGMIACD VPATGAAAPN HQPRTQEKRR MAGATAEKDG KILDAKTLRR  180
LAQNREAARK SRLRKKAYVQ QLESSRIKLT QLEQDLQRAR SQGLFFGGAS AGENISSAAA  240
IFDMEYDRWL DENYKHMTNL RGGLQAHLPE GDLRVIVDEC LTHYDEMFRL KGVAARADVF  300
HLITGMWTTP AERCFLWMGG FKPSELLKEI LIPQLDPLTE QQLVGICSLQ QSSQQAEEAL  360
SQGLEKLHQS LRDTVSSGSL CEGTNVGNYM DQMGVALGKL ANLEGFVRQA DNLRQQTLHQ  420
LHRILTVRQA ARSFLAIGEY HGRLRALSSL WASRPRENLI TDGSAYPTTT DLQIIHQPVH  480
SHFSAF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response (By similarity). Acts as transcriptional activator in vitro (PubMed:22353606). {ECO:0000250\|UniProtKB:Q7X993, ECO:0000269\|PubMed:22353606}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029118361.1	0.0	transcription factor TGAL5 isoform X2
Swissprot	Q5N7C7	0.0	LG2_ORYSJ; Transcription factor LG2
TrEMBL	A0A3Q0I386	0.0	A0A3Q0I386_PHODC; transcription factor TGAL5-like isoform X3
STRING	XP_008787868.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-158	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation. Plant Methods, 2012. 8(1): p. 6 [PMID:22353606] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]