PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010912288.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bZIP

Protein Properties

Length: 472aa MW: 52272.7 Da PI: 6.6757

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010912288.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.9	2.8e-10	158	198	5	45
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L XP_010912288.1 158 KTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDL 198 7789************************9777777666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.7E-8	152	197	No hit	No description
SMART	SM00338	1.2E-5	154	218	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.22	156	200	IPR004827	Basic-leucine zipper domain
CDD	cd14708	1.92E-23	158	210	No hit	No description
Pfam	PF00170	3.5E-7	158	199	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.5E-7	158	200	No hit	No description
PROSITE pattern	PS00036	0	161	176	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.7E-29	238	310	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence Send to blast
MANHRVGETG LSESGPSSQP LAYGVHGIPP AATNFFDQEG AAYFGELEAA LMHGVAGIRS 60 DEDRKPFFTT RPPTLEIFPS WPMRFQQTPK GNSQPVESTD SGSAQNTISQ LDSDSPVSIK 120 ASSEQCSEQN QQQQGMIACD VPATGAAAPN HQPRTQEKTL RRLAQNREAA RKSRLRKKAY 180 VQQLESSRIK LTQLEQDLQR ARSQGLFFGG ASAGENISSA AAIFDMEYDR WLDENYKHMT 240 NLRGGLQAHL PEGDLRVIVD ECLTHYDEMF RLKGVAARAD VFHLITGMWT TPAERCFLWM 300 GGFKPSELLK EILIPQLDPL TEQQLVGICS LQQSSQQAEE ALSQGLEKLH QSLRDTVSSG 360 SLCEGTNVGN YMDQMGVALG KLANLEGFVR QADNLRQQTL HQLHRILTVR QAARSFLAIG 420 EYHGRLRALS SLWASRPRDA CIRNLITDGS AYPTTTDLQI IHQPVHSHFS AF

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence Send to blast

MANHRVGETG LSESGPSSQP LAYGVHGIPP AATNFFDQEG AAYFGELEAA LMHGVAGIRS  60
DEDRKPFFTT RPPTLEIFPS WPMRFQQTPK GNSQPVESTD SGSAQNTISQ LDSDSPVSIK  120
ASSEQCSEQN QQQQGMIACD VPATGAAAPN HQPRTQEKTL RRLAQNREAA RKSRLRKKAY  180
VQQLESSRIK LTQLEQDLQR ARSQGLFFGG ASAGENISSA AAIFDMEYDR WLDENYKHMT  240
NLRGGLQAHL PEGDLRVIVD ECLTHYDEMF RLKGVAARAD VFHLITGMWT TPAERCFLWM  300
GGFKPSELLK EILIPQLDPL TEQQLVGICS LQQSSQQAEE ALSQGLEKLH QSLRDTVSSG  360
SLCEGTNVGN YMDQMGVALG KLANLEGFVR QADNLRQQTL HQLHRILTVR QAARSFLAIG  420
EYHGRLRALS SLWASRPRDA CIRNLITDGS AYPTTTDLQI IHQPVHSHFS AF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response (By similarity). Acts as transcriptional activator in vitro (PubMed:22353606). {ECO:0000250\|UniProtKB:Q7X993, ECO:0000269\|PubMed:22353606}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010912286.1	0.0	transcription factor TGAL5 isoform X1
Swissprot	Q5N7C7	1e-175	LG2_ORYSJ; Transcription factor LG2
TrEMBL	A0A3Q0I3P0	0.0	A0A3Q0I3P0_PHODC; transcription factor TGAL5-like isoform X2
STRING	XP_008787868.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-149	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation. Plant Methods, 2012. 8(1): p. 6 [PMID:22353606] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]