PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010912289.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

FAR1

Protein Properties

Length: 854aa MW: 97795.5 Da PI: 7.7466

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010912289.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85	1.2e-26	92	180	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY +YA ++GFsvr+++s++sk n+++++ +fvCs+eg+++e++ +k+r++ a+ r gCka+l+v ++ d+kw+vtkl++eHnHe+ XP_010912289.1 92 FYIAYAGRIGFSVRIARSRRSKCNESVIMLRFVCSREGFSREKRIIaGKKTRKRAASIREGCKAMLEVIRRGDEKWVVTKLVKEHNHEV 180 9************************************998876546788888999****************************96 PP
2	FAR1	59.8	8.6e-19	215	306	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +Y +YA+++GF+ r+++s++s ++++ ++ ++vCsk+ +++ ++++ ++k+ + + ++ gC+a +++ +++ + w+v+kl+leH+Hel+p XP_010912289.1 215 YYYAYASRMGFEARVRQSRRSLHDESLKMLKLVCSKHRYHSGRDNNsdDSKRLQIQDPNKEGCEALFEIIRKDGDMWVVSKLVLEHTHELTP 306 8*************************************9999994444455577889****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-24	92	180	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.4E-16	215	306	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.8E-22	407	498	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.965	684	722	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.0E-8	687	719	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.4E-5	697	724	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 854 aa Download sequence Send to blast
MDGNPHGDSG LIDHHVDLED DSINFWATLG VSPHVMEPEQ NPMPPHHHME RQPPLEMVEQ 60 SVRRELFAME GDPRLDPFVG MEFESGEAAK TFYIAYAGRI GFSVRIARSR RSKCNESVIM 120 LRFVCSREGF SREKRIIAGK KTRKRAASIR EGCKAMLEVI RRGDEKWVVT KLVKEHNHEV 180 GMPSRVHYIA TEEGDAVIDP YLGMEFESLE IAKTYYYAYA SRMGFEARVR QSRRSLHDES 240 LKMLKLVCSK HRYHSGRDNN SDDSKRLQIQ DPNKEGCEAL FEIIRKDGDM WVVSKLVLEH 300 THELTPSPPS KVRCIRSQGE ILVISKNFDD TRNLLLNGQD SRYPREIRYN DLGPEDAQNL 360 LEYFKKTQAE NPAFYYAVQV ENNNCMTNIF WADAKARMAY YYFGDAVRLD TTYKNDKELM 420 PIVIFTGVNH HLQPVVFGCA LLVDESEASF VWLFENWLAA MPASHPVSLI TELNRAMATA 480 VAKVLPNAHH CFCKKHVLNT IQEELPDLYS VHSPFEGELK KCVDGSETRE SFESCWDAII 540 DKYGLKENAY LQSLYSIRQQ WLPVYLKETF FAAESVSQRC ENLDKVIEKY FTVKAPLRGA 600 VRQLGQATAS WYEKESQADF ITLFEKPFLK TASPMEKQAA GIYTRTIFNR FQKEFVESLG 660 YHVDKIEDGV ISKYQVLRNE DAEETCRVTF NASENKAHCS CCMFESSGVL CRHALRVFII 720 NGVRMLPKDY ILKRWTKHAK SGAVLDDYGV ELRGSCEDPS TARYNDLCRD AIKCAREGAT 780 TAEFYKVAKD ALQKAVDEVV SAKQKMGQQT LQSFITSQKR QTKKLGKVTP RKDASTKNVK 840 KLASKKPLME HDIR

Sequence ? help Back to Top

Protein Sequence Length: 854 aa Download sequence Send to blast

MDGNPHGDSG LIDHHVDLED DSINFWATLG VSPHVMEPEQ NPMPPHHHME RQPPLEMVEQ  60
SVRRELFAME GDPRLDPFVG MEFESGEAAK TFYIAYAGRI GFSVRIARSR RSKCNESVIM  120
LRFVCSREGF SREKRIIAGK KTRKRAASIR EGCKAMLEVI RRGDEKWVVT KLVKEHNHEV  180
GMPSRVHYIA TEEGDAVIDP YLGMEFESLE IAKTYYYAYA SRMGFEARVR QSRRSLHDES  240
LKMLKLVCSK HRYHSGRDNN SDDSKRLQIQ DPNKEGCEAL FEIIRKDGDM WVVSKLVLEH  300
THELTPSPPS KVRCIRSQGE ILVISKNFDD TRNLLLNGQD SRYPREIRYN DLGPEDAQNL  360
LEYFKKTQAE NPAFYYAVQV ENNNCMTNIF WADAKARMAY YYFGDAVRLD TTYKNDKELM  420
PIVIFTGVNH HLQPVVFGCA LLVDESEASF VWLFENWLAA MPASHPVSLI TELNRAMATA  480
VAKVLPNAHH CFCKKHVLNT IQEELPDLYS VHSPFEGELK KCVDGSETRE SFESCWDAII  540
DKYGLKENAY LQSLYSIRQQ WLPVYLKETF FAAESVSQRC ENLDKVIEKY FTVKAPLRGA  600
VRQLGQATAS WYEKESQADF ITLFEKPFLK TASPMEKQAA GIYTRTIFNR FQKEFVESLG  660
YHVDKIEDGV ISKYQVLRNE DAEETCRVTF NASENKAHCS CCMFESSGVL CRHALRVFII  720
NGVRMLPKDY ILKRWTKHAK SGAVLDDYGV ELRGSCEDPS TARYNDLCRD AIKCAREGAT  780
TAEFYKVAKD ALQKAVDEVV SAKQKMGQQT LQSFITSQKR QTKKLGKVTP RKDASTKNVK  840
KLASKKPLME HDIR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008784021.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_026658787.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_026658788.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2H3XHZ4	0.0	A0A2H3XHZ4_PHODC; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_008784021.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-152	FAR1-related sequence 5