PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010912317.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

NAC

Protein Properties

Length: 241aa MW: 27567.9 Da PI: 8.4259

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010912317.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	134.9	5.6e-42	4	134	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppG+rF Pt+eel+++yL++k+e+++ ++e+vi+ v++y+++P +Lp +++ + ++w+fF++ ++++a+g r++r+t sgyWk tg+ XP_010912317.1 4 LPPGYRFYPTEEELLSFYLRNKLENRRQDMERVIPVVGVYSYDPVQLPpIsgEASIrDPEQWFFFCPMQEREAQGGRPTRTTPSGYWKLTGSPSY 98 79**************************99***********95344332324569****************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyr 127 vls+++ +g kkt+vfy+grap+g+kt+W m+ey+ XP_010912317.1 99 VLSSQNLRIGWKKTMVFYTGRAPTGTKTKWKMNEYK 134 99999**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.18E-47	2	162	IPR003441	NAC domain
PROSITE profile	PS51005	45.865	4	162	IPR003441	NAC domain
Pfam	PF02365	2.4E-23	5	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MTDLPPGYRF YPTEEELLSF YLRNKLENRR QDMERVIPVV GVYSYDPVQL PPISGEASIR 60 DPEQWFFFCP MQEREAQGGR PTRTTPSGYW KLTGSPSYVL SSQNLRIGWK KTMVFYTGRA 120 PTGTKTKWKM NEYKALEEAV ATTSSTHPKL RNEFSVCRVY IKSGTLRSFD RRPSANVAMN 180 SESRRRNPEA SSSANPQIAE RTSSHGCSSP RDDGLLPLAA DGTFDWNMLE DIDPEQFGRW 240 E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-32	4	165	17	168	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-32	4	165	17	168	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-32	4	165	17	168	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-32	4	165	17	168	NO APICAL MERISTEM PROTEIN
4dul_A	6e-32	4	165	17	168	NAC domain-containing protein 19
4dul_B	6e-32	4	165	17	168	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010912317.1	0.0	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	5e-73	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2H3WZR8	1e-136	A0A2H3WZR8_PHODC; NAC domain-containing protein 90-like
STRING	XP_008784235.1	1e-144	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	2e-75	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]