PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010912402.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bZIP

Protein Properties

Length: 344aa MW: 36833.9 Da PI: 7.4764

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010912402.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.7	6.7e-10	185	243	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK ++ eLe+kv++L++e ++L +l l+ l++e+ XP_010912402.1 185 KRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQLTLLQRDTTGLTAEN 243 9********************************************99998877777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.2E-16	181	245	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.944	183	246	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.4E-8	185	239	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.3E-10	185	239	No hit	No description
SuperFamily	SSF57959	1.05E-10	185	237	No hit	No description
CDD	cd14703	7.36E-25	186	235	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MDPTGLPPTN HRFGLIPPNP RSVGGGHRRA HSETFLHLPD DLLFDSDPDF SISDIDFPSL 60 SDDSLSAGDA VAPGGGPPPV DSRRSDPPAV EQGRAGKPAG GAHLRSLSVD AAFFEGLSFQ 120 AAPASAAPAG GGDGMQDKRG LHRRSGSMDG ATSPFEGQSA SSTSDCAKKA MVADKLAELA 180 LIDPKRAKRI LANRQSAARS KERKIRYTSE LERKVQTLQT EATTLSAQLT LLQRDTTGLT 240 AENRELKLRL QAMEQQAKLR DALNEALREE VQRLKIATGQ HPNINGNCFN GGHQRTVPPY 300 FSHSQQLPHL SGQQAQHHHQ SPSQSSSNGQ SVSGPSMSDS MDFM

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MDPTGLPPTN HRFGLIPPNP RSVGGGHRRA HSETFLHLPD DLLFDSDPDF SISDIDFPSL  60
SDDSLSAGDA VAPGGGPPPV DSRRSDPPAV EQGRAGKPAG GAHLRSLSVD AAFFEGLSFQ  120
AAPASAAPAG GGDGMQDKRG LHRRSGSMDG ATSPFEGQSA SSTSDCAKKA MVADKLAELA  180
LIDPKRAKRI LANRQSAARS KERKIRYTSE LERKVQTLQT EATTLSAQLT LLQRDTTGLT  240
AENRELKLRL QAMEQQAKLR DALNEALREE VQRLKIATGQ HPNINGNCFN GGHQRTVPPY  300
FSHSQQLPHL SGQQAQHHHQ SPSQSSSNGQ SVSGPSMSDS MDFM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010912402.1	0.0	transcription factor VIP1
TrEMBL	A0A2H3XIF6	1e-173	A0A2H3XIF6_PHODC; transcription factor VIP1-like
STRING	XP_008784139.1	1e-173	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1925	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G43700.1	8e-50	VIRE2-interacting protein 1