PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010912425.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family Trihelix
Protein Properties Length: 404aa    MW: 46834.9 Da    PI: 8.8308
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010912425.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix742.5e-2383180186
        trihelix   1 rWtkqevlaLiearr........emeerlrrgk...lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
                     +Wt ++v++Li+a++        e +++ rr++   +kk +W+ +sk+m erg+ +sp+qC++k+++lnkryk++ ++ +++ +++++++ +++d
  XP_010912425.1  83 KWTGRMVRLLITAVSyvgddaisEYNNDGRRKSavlQKKRKWKCISKVMTERGCYVSPQQCEDKFNDLNKRYKRLVDILGRGtACKVVENPALLD 177
                     7**************555555553333444333777**********************************************55*********** PP

        trihelix  84 qle 86 
                     q++
  XP_010912425.1 178 QMK 180
                     *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.1E-2081206No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MHHQQHPQAS FGHHQQQPSS TQLHQSLMVH PPMHEVFPLT ANHMKDVKTS MSDDGDQSLA  60
EDRVNDQDDG GKGKKGTPWQ RMKWTGRMVR LLITAVSYVG DDAISEYNND GRRKSAVLQK  120
KRKWKCISKV MTERGCYVSP QQCEDKFNDL NKRYKRLVDI LGRGTACKVV ENPALLDQMK  180
HISDKLKDDV KKILSSKHLF YEEMCSYHNA NRLNLPHDPA LQRSLQLALR SRDEHGTRRA  240
VHGNNDEDGQ GTDDEKDHAP EHTTLHSDVG GSCFPKRMKH LVDHEEVSFG SPSGLQDCIR  300
RPHPQDTSVD MKQVFPEGST VTWVQKHSKN FPSLQLEERT HNIKLQMLEL ERQSFKWQQL  360
SKKKDRELNK MRMENERMKL ENERLALELK RREFEVDLNL KSSQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019703801.10.0uncharacterized protein LOC105038344 isoform X3
TrEMBLA0A2H3XI520.0A0A2H3XI52_PHODC; uncharacterized protein LOC103703173
STRINGXP_008784156.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-100sequence-specific DNA binding transcription factors