PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010912488.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

LSD

Protein Properties

Length: 128aa MW: 13475.7 Da PI: 7.8699

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010912488.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	33.8	5.7e-11	39	63	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYPr A +V+C++C tV XP_010912488.1 39 CGSCRELLSYPRSAVYVQCPCCKTV 63 ************************9 PP
2	zf-LSD1	38.7	1.6e-12	77	101	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C lL+YP+GApsVRC++C +V XP_010912488.1 77 CGKCCMLLMYPYGAPSVRCSSCSFV 101 **********************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.6E-12	36	66	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	3.1E-9	39	63	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.2E-8	75	104	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.2E-10	77	101	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence Send to blast
MGSSPEAVPP GWENLGPPPP PVSSAPPPPP SPEMGQMVCG SCRELLSYPR SAVYVQCPCC 60 KTVNFVLEAH QVGNVKCGKC CMLLMYPYGA PSVRCSSCSF VTAIGAHNIR PPVSVQQGQL 120 PPPQSPVQ

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010912488.1	1e-85	protein LOL2 isoform X1
Swissprot	O65426	1e-38	LOL2_ARATH; Protein LOL2
TrEMBL	A0A2H3WZS7	4e-56	A0A2H3WZS7_PHODC; protein LOL2
STRING	XP_008776177.1	6e-57	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1347	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	8e-36	lsd one like 2