PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010912536.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

ZF-HD

Protein Properties

Length: 256aa MW: 27696.4 Da PI: 9.6868

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010912536.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	95.1	5.5e-30	33	84	4	56
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 +Y+eC+kNhAa++Gg+++DGCgEfmp g+eg+ +alkCaACgCHRnFHRr XP_010912536.1 33 EKYRECMKNHAAAIGGQVYDGCGEFMPG-GKEGSLEALKCAACGCHRNFHRRA 84 58***********************9.999*****************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	2.0E-19	34	83	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.8E-28	34	83	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.7E-27	34	84	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.049	35	84	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	1.0E-29	159	226	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.97E-18	163	225	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.4E-26	167	224	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MDLSVVPYGE MGRSKVDRGR EPRAADGGGG GAEKYRECMK NHAAAIGGQV YDGCGEFMPG 60 GKEGSLEALK CAACGCHRNF HRRAGFFCGD RCRPLLLKAA PSPSGFPVFL TPPPHPMPLP 120 FHAIRPPPXP PPPPPAAYQE DRSRVGSETP PQREEPAAAE GPRGAVRKRY RTKFTQEQKE 180 KMQAFAEKLG WRIQKHDVVA LEEFCVEVGV KRHVLKVWMH NNKNHLSSSS SSAATAAPAA 240 TAAPKPDATS APPIRV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-28	168	229	18	79	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029118399.1	0.0	LOW QUALITY PROTEIN: zinc-finger homeodomain protein 2-like
Swissprot	Q9SB61	4e-56	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A2H3Z3I1	1e-123	A0A2H3Z3I1_PHODC; zinc-finger homeodomain protein 8-like
STRING	XP_008807662.1	1e-124	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3950	32	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	7e-53	homeobox protein 22

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]