PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010912567.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GRAS
Protein Properties Length: 461aa    MW: 52508.6 Da    PI: 6.6768
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010912567.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS313.45.1e-96714471373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl +A+av++++ + a  +L +l +++s +gdp+qR+aayft +Laar++   s  y+++ + +t+    +ee++a++ ++++sP+++f+h
  XP_010912567.1  71 LIDLLLVAATAVDAHNVSSAVDALHELYHRVSLNGDPIQRVAAYFTDGLAARILTRRSPFYRTIMAHTTA----EEEFSAFTQLYQASPYYQFAH 161
                     5789***************************************************9*****999998886....789999999************ PP

            GRAS  96 ltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp.egpp.slRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlv 182
                     +taNqaI ea+e+e     +r+H+iDfd+s+G+QWp+L+q+L++++ ++ p slRi g+g     s eel+et+ rL +f + + ++ f+f+ l 
  XP_010912567.1 162 FTANQAIIEAFEKEemqngRRLHVIDFDVSYGFQWPSLIQSLSDKAtSSMPiSLRIMGFGG----SIEELKETEIRLVNFTKGCrNLIFKFEGL- 251
                     *************988888899*********************999744445*********....9***************98648*******8. PP

            GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                        l   + ++++++++ +l+Vnlv+ l++l  +    +se+ ++L ++ sl+P vvv+ve+e +   ++Fl rf+e+l+yy+a+fdsl+  lp+
  XP_010912567.1 252 ---LRGSSSSDFKIEKDATLVVNLVFYLQNLR-S----SSEIYHTLMAISSLNPSVVVLVEKEGSQRPQNFLSRFMESLHYYAAMFDSLNDCLPA 338
                     ...77778899*******************97.3....3334679************************************************** PP

            GRAS 278 eseerikvErellgreivnvvacegae..rrerhetlekWrerleeaGFkpvplsekaakqaklllr........kvk.sdgyrveee.sgslv. 359
                     es er ++E+  lgrei+ + ++e++e  +  r e+l +W++++e++GF++++ls++ ++qaklll+        +++ + g+r+ e+ +g ++ 
  XP_010912567.1 339 ESTERLSIEKNHLGREIQAAMTNEEKEeeKHLRFERLDTWKKKMESFGFEEIKLSSRSMSQAKLLLKirshcssiEHDgGGGFRISERdEGHAIs 433
                     ***********************998844566889999****************************84333332223334469999773455557 PP

            GRAS 360 lgWkdrpLvsvSaW 373
                     lgW+dr L++vSaW
  XP_010912567.1 434 LGWQDRHLTTVSAW 447
                     ************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.46345417IPR005202Transcription factor GRAS
PfamPF035141.8E-9371447IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MPSLDLGIGS TWCSSDAKKR KRRDESNSIA CGTLMQDVLD KRFFRLLQER ERMLRVDPRR  60
NELEDGKGLQ LIDLLLVAAT AVDAHNVSSA VDALHELYHR VSLNGDPIQR VAAYFTDGLA  120
ARILTRRSPF YRTIMAHTTA EEEFSAFTQL YQASPYYQFA HFTANQAIIE AFEKEEMQNG  180
RRLHVIDFDV SYGFQWPSLI QSLSDKATSS MPISLRIMGF GGSIEELKET EIRLVNFTKG  240
CRNLIFKFEG LLRGSSSSDF KIEKDATLVV NLVFYLQNLR SSSEIYHTLM AISSLNPSVV  300
VLVEKEGSQR PQNFLSRFME SLHYYAAMFD SLNDCLPAES TERLSIEKNH LGREIQAAMT  360
NEEKEEEKHL RFERLDTWKK KMESFGFEEI KLSSRSMSQA KLLLKIRSHC SSIEHDGGGG  420
FRISERDEGH AISLGWQDRH LTTVSAWHCM QSPNCSPGCN L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-52584472378Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11722KKRKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010912567.20.0scarecrow-like protein 21
TrEMBLA0A2H3XIE40.0A0A2H3XIE4_PHODC; scarecrow-like protein 3
STRINGXP_008784262.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116493038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.11e-50SCARECROW-like 21