PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010912590.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

NAC

Protein Properties

Length: 199aa MW: 22759.6 Da PI: 5.5723

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010912590.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	122.5	3.7e-38	8	125	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGf+F P+d+elvv++L++k+++ +++ ++i+++d+ +++PwdL+ k+ ++ k wyfF++r +nr t++gyWk t +++++s XP_010912590.1 8 LPPGFHFFPSDQELVVHFLHRKAARLPCQP-DIIPTIDLRYCDPWDLNGKAFQGGKYWYFFTHRV--------QNRETANGYWKPTDMEESITS- 92 79***********************999.99**********976667899**985........58999************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +vglk+tL+fy g+ p+g kt+Wvmhey+l XP_010912590.1 93 GDIDVGLKRTLIFYVGEPPEGMKTNWVMHEYHL 125 999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.53E-48	5	164	IPR003441	NAC domain
PROSITE profile	PS51005	42.984	8	165	IPR003441	NAC domain
Pfam	PF02365	6.4E-24	9	125	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MGEGTTNLPP GFHFFPSDQE LVVHFLHRKA ARLPCQPDII PTIDLRYCDP WDLNGKAFQG 60 GKYWYFFTHR VQNRETANGY WKPTDMEESI TSGDIDVGLK RTLIFYVGEP PEGMKTNWVM 120 HEYHLLDGVL SSASSSGGSS RRSLKKRSNT RMEPNKWIIC RVYESSCASQ NFHDDGLELS 180 CLDEVFLSFD DLDEVSLPK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-38	7	171	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-38	7	171	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-38	7	171	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-38	7	171	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	8e-38	7	171	19	174	NAC domain-containing protein 19
3swm_B	8e-38	7	171	19	174	NAC domain-containing protein 19
3swm_C	8e-38	7	171	19	174	NAC domain-containing protein 19
3swm_D	8e-38	7	171	19	174	NAC domain-containing protein 19
3swp_A	8e-38	7	171	19	174	NAC domain-containing protein 19
3swp_B	8e-38	7	171	19	174	NAC domain-containing protein 19
3swp_C	8e-38	7	171	19	174	NAC domain-containing protein 19
3swp_D	8e-38	7	171	19	174	NAC domain-containing protein 19
4dul_A	7e-38	7	171	16	171	NAC domain-containing protein 19
4dul_B	7e-38	7	171	16	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010912590.1	1e-150	NAC domain-containing protein 104
Swissprot	Q8GWK6	4e-63	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A2H3YIL9	1e-124	A0A2H3YIL9_PHODC; NAC domain-containing protein 104-like
STRING	XP_008799070.1	1e-125	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3667	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	7e-64	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]