PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010912668.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family Whirly
Protein Properties Length: 238aa    MW: 26655.7 Da    PI: 10.3878
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010912668.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly193.82.6e-60601972139
          Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkv 96 
                     ++k+kaal+v +++p+f ++dsg+ +++r+G +++++ +a+++rkydW+kkq+fals+tev++l++l + escef+hdp++k+s eG+v+k+l+v
  XP_010912668.1  60 IFKGKAALSVSPKLPSFCKVDSGSSRVDRKGVVMMTFWPAVGQRKYDWQKKQVFALSPTEVGSLISLDPDESCEFLHDPSMKSSLEGQVKKSLSV 154
                     9********************************************************************************************** PP

          Whirly  97 ePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                      Pl + sG+f+nl+v n+++k+ne+fs+Pv+kaefav+r++l+
  XP_010912668.1 155 TPLGNSSGYFLNLTVVNTIQKTNERFSIPVTKAEFAVMRTALS 197
                     ****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.106.6E-7251214IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.8E-6651236IPR009044ssDNA-binding transcriptional regulator
PfamPF085368.3E-5960194IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MLKLSRFLPS RNEQARKFLL GKATKIKDTF WLSAFSSQHG ISTSGPDLVA NDRRFANYTI  60
FKGKAALSVS PKLPSFCKVD SGSSRVDRKG VVMMTFWPAV GQRKYDWQKK QVFALSPTEV  120
GSLISLDPDE SCEFLHDPSM KSSLEGQVKK SLSVTPLGNS SGYFLNLTVV NTIQKTNERF  180
SIPVTKAEFA VMRTALSYAL PHIMGWDQVI RPQLPNIPRS TPKHQSDVLP DPDFEWGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A1e-755320910166Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B1e-755320910166Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C1e-755320910166Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D1e-755320910166Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010912668.21e-176single-stranded DNA-binding protein WHY2, mitochondrial
SwissprotD9J0345e-81WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A2H3Y9911e-156A0A2H3Y991_PHODC; single-stranded DNA-binding protein WHY2, mitochondrial isoform X4
STRINGXP_008795279.11e-157(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30123885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.15e-78WHIRLY 2