PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010912759.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family FAR1
Protein Properties Length: 748aa    MW: 85806.7 Da    PI: 7.3086
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010912759.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.56e-2080173190
            FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                     +fY ++A++ GF +r+++sk +  +   ++kr++vC + g + ++k+++ k++r+++++r++C+a++ +kk+      +w+v ++++ HnHel 
  XP_010912759.1  80 EFYTNFARRNGFAIRRERSKGNpAHPLGVYKRELVCHRAGVSLPRKTAELKRQRNKKSSRCKCEAQMIIKKNVskgVTRWVVVHFSNVHNHELL 173
                     6******************999766667********************99999******************98766679*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.6E-1780173IPR004330FAR1 DNA binding domain
PfamPF105518.1E-21295388IPR018289MULE transposase domain
PROSITE profilePS509669.73560608IPR007527Zinc finger, SWIM-type
PfamPF044347.2E-7580607IPR007527Zinc finger, SWIM-type
SMARTSM005756.2E-4583610IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 748 aa     Download sequence    Send to blast
MTKTSSRNNG CLTQRRQCPC GDEQCYIRIE GDEEDTSVEP MVPADPNLIN AAAHTSSEVA  60
SADTPPYVGQ SFRTDDEAQE FYTNFARRNG FAIRRERSKG NPAHPLGVYK RELVCHRAGV  120
SLPRKTAELK RQRNKKSSRC KCEAQMIIKK NVSKGVTRWV VVHFSNVHNH ELLDSDEVRH  180
LPAYRNISSV DRERILFFAK AGFTVNLIMR ALEMEKGLKP GQLTFTERDL RNFLQASKNI  240
NRENEGAELV KACKAIKEKS PDFRYEFTLD MNDKLEHIAW SYPDSIRAYK VFGDVVVFDT  300
TYRLYAYDRP FGVWFGVDNY GNTIFFGCVL LQDEKPASFA WALQAFVHLM DEKVPQTMVT  360
DLDMGLREAI MNVLPDTKQA FSTWHIMSKL PSWFSTLLGS QYERFVSEFH GVYNLESEND  420
FVHQWGQMIN EFGLGSDRHI AILSYHREYW ALPFLRGWLF GGLLTTGFSL SIKAFFKGFL  480
VSQTRLKDFV EQVMVAIDLQ NQAGEEATMR QNYQNVQIKT CMPVEEHASS VLTPYAFEMF  540
QRELVSSTQF AVYETQRDTY LVRHHLKTDG GHLVSCIPAN EEIHCSCKEF EFSGIMCRHS  600
LRVLSLKNCF MLPEKYLLIR WRRESSLFPK SSGYKYRSQA LRSLASIIIQ ESSLTKDRFD  660
YAQWHMSKLL THVRDMPTVD EGASDLEPVS SLDATVDVTP VRSRGRPKKL KAAIDIPKEM  720
QALQESQALP EMQVLSETQD LSETQALS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010912759.10.0protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A2H3Y4040.0A0A2H3Y404_PHODC; protein FAR1-RELATED SEQUENCE 11-like
STRINGXP_008792978.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11