PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010912762.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

FAR1

Protein Properties

Length: 844aa MW: 96191 Da PI: 8.9904

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010912762.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.8	1.5e-17	74	157	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY++YA++vGF v++++s+ + ++g++ +++C k g++++e k r+r++ t+C ak++vk++ dg +++ +l+HnH+++ XP_010912762.1 74 KFYKRYARRVGFGVSVRRSSFT-KEGQCLYLELMCCKGGRKRPEPKF-----RKRTSATTNCPAKIRVKLWGDGMLHLELANLDHNHPVS 157 6***************9998.6677************9988.....99999****************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.3E-16	74	158	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.1E-32	279	372	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.827	566	602	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.2E-4	577	604	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	4.0E-5	578	598	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 844 aa Download sequence Send to blast
MEEPSARPKN PRRARLARRD LNSKDMAARG AVDGVGNAEG MEDDELDGDN VTEGGYDGVP 60 EVGMVFKTHQ EVSKFYKRYA RRVGFGVSVR RSSFTKEGQC LYLELMCCKG GRKRPEPKFR 120 KRTSATTNCP AKIRVKLWGD GMLHLELANL DHNHPVSPSM ARFLSCYKQL GAAKKRGAER 180 MNDDGVMVQP EELPQVPVDR LAALEELLFS ESGHRSFVER GRLRLGEGDA EALRLFFTRM 240 QAKNSNFFNV VDLDEEGCVR NVFWADARSR AAYQYYNDVV ALDTTYVTNK YDMPLATFVG 300 VNHHGQPVLL GCSFLADETT ETYVWLLKAW LACMSGHLPK ALISDHCKGI QSAVSEVLPG 360 IRHRLCLWQI MKRVPEKLGG LAEYRAINKA IQKAVYDSLR VDEFEEDWRR MIEMCGLQGN 420 EWLRSLYECR HAWAPVYLKD TFWAGMSTTQ RNETMNAFFD GYIDSKTSLK QFLCKYEMAL 480 QSKYEKEAQA DFETFHKRRP SVSKFYMEEQ LSKVYTLNMF KKFQDEIEAI MYCHASLVKS 540 DGPVSTFDVK ECIFLDDGKR TMNRNHGVLF NAEQKEVQCI CGSFQFRGIL CRHALSVFKL 600 QQVHEIPSQY ILDRWKKDFK RLHVMARSSD DVVANNRVDR YDYLSMRCLQ LVEVGVLSDK 660 YQLALKLIRE MEKFLLSDST HDDTQPKIKP RVPKTNKLNR NINQNVGNIV ASENGNEVRR 720 RGRPPQAKES QASLGTSKEG VNPQVFPPGS QFGMPMNHSQ YIGPQAAMRP SIVYMFPGGF 780 DPQTFGNGPM MPWIYQQMFQ AAQKPKESPG PSAGQPTRKR KIYRGHKPVE ATQEPKEPPA 840 PAAG

Sequence ? help Back to Top

Protein Sequence Length: 844 aa Download sequence Send to blast

MEEPSARPKN PRRARLARRD LNSKDMAARG AVDGVGNAEG MEDDELDGDN VTEGGYDGVP  60
EVGMVFKTHQ EVSKFYKRYA RRVGFGVSVR RSSFTKEGQC LYLELMCCKG GRKRPEPKFR  120
KRTSATTNCP AKIRVKLWGD GMLHLELANL DHNHPVSPSM ARFLSCYKQL GAAKKRGAER  180
MNDDGVMVQP EELPQVPVDR LAALEELLFS ESGHRSFVER GRLRLGEGDA EALRLFFTRM  240
QAKNSNFFNV VDLDEEGCVR NVFWADARSR AAYQYYNDVV ALDTTYVTNK YDMPLATFVG  300
VNHHGQPVLL GCSFLADETT ETYVWLLKAW LACMSGHLPK ALISDHCKGI QSAVSEVLPG  360
IRHRLCLWQI MKRVPEKLGG LAEYRAINKA IQKAVYDSLR VDEFEEDWRR MIEMCGLQGN  420
EWLRSLYECR HAWAPVYLKD TFWAGMSTTQ RNETMNAFFD GYIDSKTSLK QFLCKYEMAL  480
QSKYEKEAQA DFETFHKRRP SVSKFYMEEQ LSKVYTLNMF KKFQDEIEAI MYCHASLVKS  540
DGPVSTFDVK ECIFLDDGKR TMNRNHGVLF NAEQKEVQCI CGSFQFRGIL CRHALSVFKL  600
QQVHEIPSQY ILDRWKKDFK RLHVMARSSD DVVANNRVDR YDYLSMRCLQ LVEVGVLSDK  660
YQLALKLIRE MEKFLLSDST HDDTQPKIKP RVPKTNKLNR NINQNVGNIV ASENGNEVRR  720
RGRPPQAKES QASLGTSKEG VNPQVFPPGS QFGMPMNHSQ YIGPQAAMRP SIVYMFPGGF  780
DPQTFGNGPM MPWIYQQMFQ AAQKPKESPG PSAGQPTRKR KIYRGHKPVE ATQEPKEPPA  840
PAAG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010912762.1	0.0	protein FAR1-RELATED SEQUENCE 6 isoform X2
TrEMBL	A0A2H3Y1J3	0.0	A0A2H3Y1J3_PHODC; protein FAR1-RELATED SEQUENCE 6-like
STRING	XP_008791822.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-143	FAR1-related sequence 6