PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010912765.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family FAR1
Protein Properties Length: 869aa    MW: 99250.2 Da    PI: 6.5599
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010912765.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.48.3e-17106189190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fY++YA + GF v ++ks+ + ++g + +  + Csk g+ +++        + r++ +t+C+a++++k++ dg  ++++ +leHnH+++
  XP_010912765.1 106 SFYKQYALHEGFGVAVRKSQFT-KSGVCRRLILACSKAGHGRQDACY-----QARQTAKTNCQAMIVLKLQGDGLLHLAEANLEHNHPVS 189
                     5****************99998.8888****************9999.....89999******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-14106190IPR004330FAR1 DNA binding domain
PfamPF105511.7E-33291385IPR018289MULE transposase domain
PROSITE profilePS509668.988578614IPR007527Zinc finger, SWIM-type
PfamPF044343.7E-6582610IPR007527Zinc finger, SWIM-type
SMARTSM005751.6E-5589616IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 869 aa     Download sequence    Send to blast
MADDSVRKEP LDVDADVNEA KDTQLNGNNT PPVGDKTSQE LLLSVSPTKE SLQGEDNDEV  60
MTVEDNGHDI EKKDAAEVEG DHEANVGDDK TPRVGMVFKS YDEVSSFYKQ YALHEGFGVA  120
VRKSQFTKSG VCRRLILACS KAGHGRQDAC YQARQTAKTN CQAMIVLKLQ GDGLLHLAEA  180
NLEHNHPVSP STARFLSCYK KMTDAMAEGP VAWPNGHRNV QSESELRSST EIGRLKLGEG  240
DDEAICQFFT GMQNKNPNFF YLVDVDKHGR LRNLFWADAR SRAAYRYFGD VISFDTTYLT  300
EKYDLPLVLF VGMNHHGQSV LLACGLVSDE TIETYIWLFK AFLTCMLGCF PTAIITDHCK  360
AIQGAVVEVF PGVRHRLCMF HVMKKIPEKL RGFAEFKAVK KAIKKASYDS SRVNEFEQDW  420
QKMTKVHGLE GNEWLDSLYE NRHLWVPAYL KDAFWAGMSI SQRGESTTAF FDGCIYPKTN  480
LKQFLNKYEM IVQSKYKKEA QADSESFHKT PLTISKFYME EQLSKLYTVN MFRKFQDELK  540
ATMYCDASPI KVDGSLITFE VRECSYMEDG KRTEKKDHEV LYDEDKVQVQ CICGSFQFRG  600
ILCRHALSVF KLQQVFEIPS HYILDRWKKD YKQLHALAHP SHDMLPDNIM ERYDYLSMRC  660
LQLAELGFLS DDRFQVALKL IREVEKSLLD DGSCRDRQPY ILSFETQPNE HVQNLLVSQL  720
GVSDSNKNSN SLQARRRGRP PKKGREPQVE SLVQLSKEQD FLRSSLVGNE NNMLQSAPLA  780
SHLDTHIGTQ GGIDLMEEVP PDDLSFGSRF SIHVNHQHHM GNQTRLQSSN LLQGQYDHQT  840
VGSQSRVQWI YQQMFQEDQM PNAHSDRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010912765.10.0protein FAR1-RELATED SEQUENCE 6 isoform X2
TrEMBLA0A2H3YM680.0A0A2H3YM68_PHODC; protein FAR1-RELATED SEQUENCE 6-like
STRINGXP_008800847.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-141FAR1-related sequence 6