PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010912856.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family Trihelix
Protein Properties Length: 409aa    MW: 46376.8 Da    PI: 6.1476
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010912856.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix84.61.2e-2695176286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     W ++e++ Li +rrem+  ++++k++k+lWe++s+kmr++gf rsp++C++kw+nl k++kk k+++k+   ++  +++y+++l+
  XP_010912856.1  95 WVQEETRSLISLRREMDALFNTSKSNKHLWEQISAKMRDKGFDRSPTMCTDKWRNLLKEFKKAKHQAKGS--GA-AKISYYKELD 176
                     *******************************************************************984..34.4789**9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.83887151IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.4E-588153IPR009057Homeodomain-like
SMARTSM007179.6E-691153IPR001005SANT/Myb domain
CDDcd122032.89E-2993158No hitNo description
PfamPF138374.4E-2194178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MSLLTLDQYL SQSVLPCFRS REDDGDEEEQ GRRKSMYLSD KPRSGDYYKE DGRGMMIQVA  60
GNGGLPPPQQ QPMILADSSG EDHEVKAPKK RAETWVQEET RSLISLRREM DALFNTSKSN  120
KHLWEQISAK MRDKGFDRSP TMCTDKWRNL LKEFKKAKHQ AKGSGAAKIS YYKELDEMLK  180
ERSKNAAYKS PPASKVDPYL QFSDKGPEDA SISYGSVEGN GRSTLNVDRH LDHERNPLAI  240
TAADEVATNG VPPWSWRDTP TNGGDNHASY GGRVISIKWG DYTRKIGIDG STEAIKDAIK  300
SAFGLRTRRA FWLEDEDEVV RSLDRDMPLG TYTLHLDDGI TIKICIYDET DRIPVRTEEK  360
TIYTQEDFRD FLNRNGWKGL RELSGFRSVD TMDDLHPGAA YQGIRLLGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A2e-4689174186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010912856.10.0trihelix transcription factor GT-1 isoform X1
SwissprotQ9FX531e-175TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A2H3ZES20.0A0A2H3ZES2_PHODC; trihelix transcription factor GT-1
STRINGXP_008812414.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56313752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-176Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]