PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010913020.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

SBP

Protein Properties

Length: 394aa MW: 42576.3 Da PI: 7.2416

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010913020.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.8	1.1e-41	91	167	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adls++++yhrrhkvCevhsk+++v+v g+eqrfCqqCsrfh l efDe krsCr+rL++hn+rrrk+q+ XP_010913020.1 91 CLVDGCKADLSNCRDYHRRHKVCEVHSKTSTVMVGGQEQRFCQQCSRFHLLAEFDEVKRSCRKRLDGHNRRRRKPQP 167 **************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	9.3E-34	84	152	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.12	88	165	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.7E-39	89	170	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	8.6E-31	91	164	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MEWDSKICSW DFSELAQHGE PNIGSVVGLS GGLGSQTGGV ECSVDLKLGG LGEFRPSERW 60 KEQSRVSTLA SSSGPSKRAR APSSATQIVS CLVDGCKADL SNCRDYHRRH KVCEVHSKTS 120 TVMVGGQEQR FCQQCSRFHL LAEFDEVKRS CRKRLDGHNR RRRKPQPESI NSGSMFSNHH 180 GTGLSTYPQI FPTATSETNW TGIAKSQEDA LYAHHPPLHV MDRQHHVGSF SLSFREGRQF 240 PFMQDSDAAF SSRATLKPSV CHPLRTNSLA ESCGGKFFSD GLTQVLDSDC ALSLLSSPPQ 300 TSGINVGQIV SADRIPMGQP LASTVQYSGL GRYSGSQASS SVSPAGFSCS GIDDEHVGNV 360 LVSDAADADL HCHSIFHVGG EGPSTSQALP FSWQ

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MEWDSKICSW DFSELAQHGE PNIGSVVGLS GGLGSQTGGV ECSVDLKLGG LGEFRPSERW  60
KEQSRVSTLA SSSGPSKRAR APSSATQIVS CLVDGCKADL SNCRDYHRRH KVCEVHSKTS  120
TVMVGGQEQR FCQQCSRFHL LAEFDEVKRS CRKRLDGHNR RRRKPQPESI NSGSMFSNHH  180
GTGLSTYPQI FPTATSETNW TGIAKSQEDA LYAHHPPLHV MDRQHHVGSF SLSFREGRQF  240
PFMQDSDAAF SSRATLKPSV CHPLRTNSLA ESCGGKFFSD GLTQVLDSDC ALSLLSSPPQ  300
TSGINVGQIV SADRIPMGQP LASTVQYSGL GRYSGSQASS SVSPAGFSCS GIDDEHVGNV  360
LVSDAADADL HCHSIFHVGG EGPSTSQALP FSWQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	9e-29	91	164	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	147	164	KRSCRKRLDGHNRRRRKP

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010913020.1	0.0	squamosa promoter-binding-like protein 16
Swissprot	Q6YZE8	6e-87	SPL16_ORYSJ; Squamosa promoter-binding-like protein 16
TrEMBL	A0A2H3YPU0	0.0	A0A2H3YPU0_PHODC; squamosa promoter-binding-like protein 16
STRING	XP_008801848.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1755	37	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	2e-45	SBP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Wang SS,Wang CS,Tseng TH,Hou YL,Chen KY High-resolution genetic mapping and candidate gene identification of the SLP1 locus that controls glume development in rice. Theor. Appl. Genet., 2011. 122(8): p. 1489-96 [PMID:21327937] Wang S, et al. Control of grain size, shape and quality by OsSPL16 in rice. Nat. Genet., 2012. 44(8): p. 950-4 [PMID:22729225] Wang S, et al. The OsSPL16-GW7 regulatory module determines grain shape and simultaneously improves rice yield and grain quality. Nat. Genet., 2015. 47(8): p. 949-54 [PMID:26147620] Wang Y, et al. A comprehensive meta-analysis of plant morphology, yield, stay-green, and virus disease resistance QTL in maize (Zea mays L.). Planta, 2016. 243(2): p. 459-71 [PMID:26474992] Lee CM, et al. Influence of Multi-Gene Allele Combinations on Grain Size of Rice and Development of a Regression Equation Model to Predict Grain Parameters. Rice (N Y), 2015. 8(1): p. 33 [PMID:26519289] Bessho-Uehara K, et al. Loss of function at RAE2, a previously unidentified EPFL, is required for awnlessness in cultivated Asian rice. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(32): p. 8969-74 [PMID:27466405]