PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010913089.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 294aa    MW: 33552.3 Da    PI: 8.3452
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010913089.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61e-05132151120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++C+ C+ksF+r  n++ H+
  XP_010913089.1 132 FSCTVCNKSFNRYNNMQMHM 151
                     89*****************9 PP
2zf-C2H216.23e-05216238123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+ksF  + + ++H +++
  XP_010913089.1 216 FKCGKCNKSFAVRGDWRTHEKNC 238
                     89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.16E-6115155No hitNo description
Gene3DG3DSA:3.30.160.604.8E-6132151IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.089132154IPR015880Zinc finger, C2H2-like
PfamPF128741.6E-4132151No hitNo description
PROSITE profilePS5015710.887132159IPR007087Zinc finger, C2H2
PROSITE patternPS000280134154IPR007087Zinc finger, C2H2
SMARTSM00355230179211IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.8E-6202236IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.96E-6202236No hitNo description
SMARTSM0035536216236IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGLRKYSMDE DLNLCFQSPP FSDWLMPPSS SSSSSPQASE CLPLLSRLEE HKKTIEEDDD  60
FLRKDVSQEK ATVALNIGLP GASGELDGGT KPIYCKKEEV EDMEGSYACN SGSEKRFWIP  120
TPSQILIGPM QFSCTVCNKS FNRYNNMQMH MWGHGSEYRR GPESLRGIQP MAMLKLPCYC  180
CAHGCKNNIN HPQAKPLKDF RTLQTHYKRK HGSKPFKCGK CNKSFAVRGD WRTHEKNCGK  240
LWFCSCGSDF KHKRSLNDHI RSFGEGHSHY LHPKIPEVEK ECIIRFDDEM VKGK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913089.10.0zinc finger protein WIP3
SwissprotQ9SGD11e-103ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A2H3ZDS01e-169A0A2H3ZDS0_PHODC; zinc finger protein WIP3-like
STRINGXP_008812244.11e-170(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44723667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-103WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]