PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010913167.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family FAR1
Protein Properties Length: 848aa    MW: 96951.1 Da    PI: 6.2226
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010913167.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.96e-2297183291
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                     fY++Y++ +GF vr+++s++    g  +++tf+C k g++  +kk+  ++ rt++  +t+Cka+++++ ++ +++w+v+ +eleHnH+l p
  XP_010913167.1  97 FYKAYGYFMGFGVRRRTSHNF--LGDRYRSTFTCCKGGSAILKKKN--TKYRTKPAVKTECKAMMVIRDRHlENRWKVEVVELEHNHPLEP 183
                     ****************99998..7777***************9999..9999************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.4E-1997183IPR004330FAR1 DNA binding domain
PfamPF105518.5E-30303396IPR018289MULE transposase domain
PROSITE profilePS509669.507584620IPR007527Zinc finger, SWIM-type
PfamPF044345.3E-4593616IPR007527Zinc finger, SWIM-type
SMARTSM005750.0011595622IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 848 aa     Download sequence    Send to blast
MEEKPAPIAP PEPATGQAAD PIPNLTPVSS PAPALPELEP REEEHNDASK DCSAGEQEGD  60
ENECLEEVNK DAPTSAEDAL VPKIGMTFDS INEAFHFYKA YGYFMGFGVR RRTSHNFLGD  120
RYRSTFTCCK GGSAILKKKN TKYRTKPAVK TECKAMMVIR DRHLENRWKV EVVELEHNHP  180
LEPDMVRFMK CFRELPASVK GQLQINDKVA ESINKSIDAA IAPGVGYKNC LSTEKDCTNH  240
AEEARKLRLG EEDVEALLKF FDSMQAQNSN FFYSWDMDDE GQLRNIFWAD ARSRAAYRYF  300
SDIITFDTRY LTKQYDLPLA LFVGVNHHGQ SILLGCGLLA DETADTCIWL FRKWLRCMSD  360
KPPDAIITDQ CKTIGGAVAK VFPHARHRFC LWHIMRKLPE KIGKMEKRKA ISDKLSEVVY  420
DSLTVTDFQR GWAEMIEQFQ LQDNEWLSTL YEDRSQWVPV YVKDTFWANM SSMQKNESNS  480
SYFDGYVTSK TSIRMFVEQY ENVLWSKYEK EVQEDFRSFS TNPNLLSELE FEKQIAEVYT  540
TNIFLEFQVE VKHLMQCISV IVDRNGPIVT HKVTELAAGK KIDYKVTYNT TEEVVWCICK  600
SFQFRGILCR HALCVLRQEL VTVLPSKYIL PRWRKDFKWL NASSSSPSIA SLHEMDIYDD  660
LYMHGHQFLM DIVEIGGAVD HDLKEFALVV MKEAREKVMK YEESHGDRRI GDNNMSSTSQ  720
LGSSCHIPAV FDLENDASPM APIARVLNPT QSHPKARSPM KRLVSQRERA IQNLNPVQVK  780
NSRSNDSTSA SVHGQEIQPN EAWAMTPIGM QEGFGHMVGS ISMNWTMHSP APYPQWPESG  840
SLDPSRRM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913167.10.0protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A2H3Z4D90.0A0A2H3Z4D9_PHODC; protein FAR1-RELATED SEQUENCE 6-like
STRINGXP_008808221.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-130FAR1-related sequence 6