PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010913242.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

GRAS

Protein Properties

Length: 409aa MW: 45899.9 Da PI: 7.2611

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010913242.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	402.2	5.2e-123	37	408	3	373
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +lL++cA+ ++ d + a+++++ ls+++sp+gd++ Rl++ ft+AL+ r+ + l + l+ps s +n ++ +++ +++v+P+l+f+hlt XP_010913242.1 37 QLLISCAKLIHRADYSDARRIISFLSTISSPHGDSTDRLIHQFTRALSLRIDN----LTHLLSPSLFS-SNGDTLQSSYLSLNKVTPFLRFAHLT 126 89************************************************9....88888899997.678888889999********** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189 aNqaIlea++g + +Hi+Df+ +G+QWp+Llqa+a+R+ ++ ps+RiTg g+ + + l++tg+rL+ fA++lg++f+f++l+ ++++ XP_010913242.1 127 ANQAILEAIDGRQSIHILDFNTLHGVQWPPLLQAIAERSddpSNRPSIRITGTGA----DLDVLHRTGDRLEAFANSLGLRFQFHPLYLSTTNVD 217 **********************************9777789******....***********************977655555 PP GRAS 190 ...eleeLrvkpgEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278 l++++++pgE+laVn+vl lh+ll++ s+++ e ++L++vk ++P vv+v+e+ea+hns+ Fl+rf+eal++y+a+f+slea+lp++ XP_010913242.1 218 tgaGLRSFQLHPGETLAVNCVLFLHKLLKDGSSTDDppcELMAFLRAVKAMKPVVVTVAEREANHNSPVFLQRFMEALDHYTAVFESLEATLPPK 312 223567778889************99999999888899************************************************* PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372 s+er+ vE+ +lgrei+++v+ eg+ rrerh ++e W+ +++ GF++v+ls +a +qaklllr ++ s+gy+++ ++++l+lgW+++pL+svS+ XP_010913242.1 313 SQERREVEELWLGREIEDIVSREGEGRRERHARFEWWEGLMRDRGFSSVQLSPFAFSQAKLLLRLHYpSEGYQLQMSKNCLFLGWQHKPLFSVSS 407 ********************************************************************************************* PP GRAS 373 W 373 W XP_010913242.1 408 W 408 * PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	58.728	9	388	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.8E-120	37	408	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MLTSLNSHTG GGGSTHHQPS HQSSPHGLIS PSTHSSQLLI SCAKLIHRAD YSDARRIISF 60 LSTISSPHGD STDRLIHQFT RALSLRIDNL THLLSPSLFS SNGDTLQSSY LSLNKVTPFL 120 RFAHLTANQA ILEAIDGRQS IHILDFNTLH GVQWPPLLQA IAERSDDPSN RPSIRITGTG 180 ADLDVLHRTG DRLEAFANSL GLRFQFHPLY LSTTNVDTGA GLRSFQLHPG ETLAVNCVLF 240 LHKLLKDGSS TDDPPCELMA FLRAVKAMKP VVVTVAEREA NHNSPVFLQR FMEALDHYTA 300 VFESLEATLP PKSQERREVE ELWLGREIED IVSREGEGRR ERHARFEWWE GLMRDRGFSS 360 VQLSPFAFSQ AKLLLRLHYP SEGYQLQMSK NCLFLGWQHK PLFSVSSWN

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MLTSLNSHTG GGGSTHHQPS HQSSPHGLIS PSTHSSQLLI SCAKLIHRAD YSDARRIISF  60
LSTISSPHGD STDRLIHQFT RALSLRIDNL THLLSPSLFS SNGDTLQSSY LSLNKVTPFL  120
RFAHLTANQA ILEAIDGRQS IHILDFNTLH GVQWPPLLQA IAERSDDPSN RPSIRITGTG  180
ADLDVLHRTG DRLEAFANSL GLRFQFHPLY LSTTNVDTGA GLRSFQLHPG ETLAVNCVLF  240
LHKLLKDGSS TDDPPCELMA FLRAVKAMKP VVVTVAEREA NHNSPVFLQR FMEALDHYTA  300
VFESLEATLP PKSQERREVE ELWLGREIED IVSREGEGRR ERHARFEWWE GLMRDRGFSS  360
VQLSPFAFSQ AKLLLRLHYP SEGYQLQMSK NCLFLGWQHK PLFSVSSWN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	7e-61	42	409	26	379	Protein SCARECROW
5b3h_A	6e-61	42	409	25	378	Protein SCARECROW
5b3h_D	6e-61	42	409	25	378	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269\|PubMed:12730136}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010913242.1	0.0	scarecrow-like protein 18
Swissprot	Q9ZWC5	1e-114	SCL18_ARATH; Scarecrow-like protein 18
TrEMBL	A0A2H3ZBT1	0.0	A0A2H3ZBT1_PHODC; scarecrow-like protein 18
STRING	XP_008811155.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3653	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	1e-113	GRAS family protein

Publications ? help Back to Top
Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]