PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010913296.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NF-YB
Protein Properties Length: 148aa    MW: 15862.6 Da    PI: 4.8628
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010913296.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB181.47.5e-5726121297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     +eqdrflPian++rim+k++P+n+ki+kdake+vqecvsefisfvtseasdkcqrekrktingddllwa++tlGfedyveplk+yl+ yre+eg+
  XP_010913296.1  26 KEQDRFLPIANIGRIMRKAIPENGKIAKDAKESVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMGTLGFEDYVEPLKLYLQLYREMEGD 120
                     89********************************************************************************************9 PP

           NF-YB  97 k 97 
                     +
  XP_010913296.1 121 S 121
                     7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.3E-5224133IPR009072Histone-fold
SuperFamilySSF471132.17E-3928127IPR009072Histone-fold
PfamPF008082.1E-283195IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006159.8E-215977No hitNo description
PROSITE patternPS0068506278IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006159.8E-217896No hitNo description
PRINTSPR006159.8E-2197115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MAESGAPGTP ESGHSGDHGG PSGGAKEQDR FLPIANIGRI MRKAIPENGK IAKDAKESVQ  60
ECVSEFISFV TSEASDKCQR EKRKTINGDD LLWAMGTLGF EDYVEPLKLY LQLYREMEGD  120
SKGSRSADQS GKKDGAINGD LGASYSGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A8e-4926116393NF-YB
4awl_B8e-4926116494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A8e-4926116494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development. {ECO:0000269|PubMed:14617083}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913296.11e-106nuclear transcription factor Y subunit B-4 isoform X1
SwissprotQ65XK11e-71NFYB4_ORYSJ; Nuclear transcription factor Y subunit B-4
TrEMBLA0A2H3Y0332e-89A0A2H3Y033_PHODC; nuclear transcription factor Y subunit B-4-like isoform X1
STRINGXP_008791402.19e-89(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.34e-64nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]