PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010913439.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family B3
Protein Properties Length: 253aa    MW: 29713.3 Da    PI: 9.892
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010913439.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.81.1e-1420842998
                    -..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3 29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                    + e+  t +l+++ g+sW vk+   ++ + +++++GW++F+ a++L +g  +vFk++g++ef  +v++f+
  XP_010913439.1 20 V-EKADTAVLRSPLGKSWHVKV--HGNFKDMYFGEGWQDFAVAHDLSVGFLLVFKYKGNMEF--KVTIFD 84
                    3.355699**************..9999999***************************9999..999987 PP
2B348.61.4e-15155253399
                     EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE..E CS
              B3   3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkld.grsefelv 93 
                     k+ +++++lk+   + +p  f ++++++++  ++++l+d++ + W v+l +r++  +  + +++GW+eF   n+LkegD+++F+ + ++++  ++
  XP_010913439.1 155 KAIIKHYNLKLkPYMNVPTIFQASYSLSSK--RQVILRDPQWQLWPVRLYHRRRNTMvqTHFGSGWREFHMYNNLKEGDTCIFEIIpEDQNDIMH 247
                     6667777777744688999**99**88854..47***************65555555668899*********************9955588889* PP

                     EEEE-S CS
              B3  94 vkvfrk 99 
                     v++frk
  XP_010913439.1 248 VHIFRK 253
                     ***996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010194.1E-5186IPR003340B3 DNA binding domain
PROSITE profilePS5086312.421186IPR003340B3 DNA binding domain
PfamPF023627.2E-122084IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-172094IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-172193IPR015300DNA-binding pseudobarrel domain
CDDcd100177.50E-152584No hitNo description
SuperFamilySSF1019367.72E-19152252IPR015300DNA-binding pseudobarrel domain
CDDcd100179.08E-15152252No hitNo description
Gene3DG3DSA:2.40.330.104.9E-20152252IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.1E-4154253IPR003340B3 DNA binding domain
PROSITE profilePS5086312.83154253IPR003340B3 DNA binding domain
PfamPF023629.5E-13156253IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MERSSLRSCS RVSLTDLKKV EKADTAVLRS PLGKSWHVKV HGNFKDMYFG EGWQDFAVAH  60
DLSVGFLLVF KYKGNMEFKV TIFDLSACEK EYNPFHANCS SDIDRRPISG SSEQLVAEHK  120
KFIAYLNRQV AIRDFKPVKK VYETRSCCSL GPHFKAIIKH YNLKLKPYMN VPTIFQASYS  180
LSSKRQVILR DPQWQLWPVR LYHRRRNTMV QTHFGSGWRE FHMYNNLKEG DTCIFEIIPE  240
DQNDIMHVHI FRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913439.30.0B3 domain-containing protein Os03g0212300 isoform X1
TrEMBLA0A2H3ZUD91e-159A0A2H3ZUD9_PHODC; B3 domain-containing protein Os03g0212300-like
STRINGXP_008798035.11e-160(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.11e-18B3 family protein