PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010913775.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bZIP
Protein Properties Length: 359aa    MW: 38938.1 Da    PI: 5.0243
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010913775.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_152.79.5e-17158212360
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                     +lkr rr+ +NRe+ArrsR+RK+a ++ Le kv++L +eN++L k+l   +++    +
  XP_010913775.1 158 DLKRMRRMVSNRESARRSRKRKQAHLADLELKVDQLRGENSSLFKQLTDANQQF---D 212
                     69***************************************9996555554444...3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-15156220IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.5E-12158212No hitNo description
PROSITE profilePS5021711.335158213IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.88E-12159211No hitNo description
PfamPF001704.2E-14159212IPR004827Basic-leucine zipper domain
CDDcd147021.34E-20161212No hitNo description
PROSITE patternPS000360163178IPR004827Basic-leucine zipper domain
PfamPF124983.1E-11227335IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MKKSLSELEL EAFLRPVGGE TDDDDDRPPP PPPTMEDLLI PAAASQKPRG DPFANVCGDL  60
GFAFGDRQET LSSHSTGVLQ AGSQQLWSQN PTPKHSGISA TIESQSSICG AGSPTSAHKP  120
KGIENPAPGG SSGSEQSDDE ESLEIEAGPC EQSTNVIDLK RMRRMVSNRE SARRSRKRKQ  180
AHLADLELKV DQLRGENSSL FKQLTDANQQ FDQAVTNNRI LRSDVETLRV KVKMAEDMVA  240
RGALTCSLDH LLQSHIGSPQ YLNTRQPCRA SSDVLSTLDF QGDDTCYTGM SAAGQVQSIA  300
MENSQNKNGG IRSRLNHSSP LESIASLENL QNRPSSEITN CGADIWPWDS PPNAMSKQL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172178RRSRKRK
2172179RRSRKRKQ
3174179SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029118634.10.0bZIP transcription factor RISBZ4 isoform X2
SwissprotQ6H5009e-83RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBLA0A2H3XCD70.0A0A2H3XCD7_PHODC; bZIP transcription factor RISBZ4 isoform X1
STRINGXP_008781732.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20953796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.16e-51basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]