PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010913776.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bZIP
Protein Properties Length: 358aa    MW: 38810 Da    PI: 5.0243
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010913776.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_152.79.6e-17157211360
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                     +lkr rr+ +NRe+ArrsR+RK+a ++ Le kv++L +eN++L k+l   +++    +
  XP_010913776.1 157 DLKRMRRMVSNRESARRSRKRKQAHLADLELKVDQLRGENSSLFKQLTDANQQF---D 211
                     69***************************************9996555554444...3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-15155219IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.335157212IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.5E-12157211No hitNo description
PfamPF001704.2E-14158211IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.88E-12158210No hitNo description
CDDcd147021.07E-20160211No hitNo description
PROSITE patternPS000360162177IPR004827Basic-leucine zipper domain
PfamPF124983.1E-11226334IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MKKSLSELEL EAFLRPVGGE TDDDDDRPPP PPPTMEDLLI PAAASQKPRG DPFANVCGDL  60
GFAFGDRETL SSHSTGVLQA GSQQLWSQNP TPKHSGISAT IESQSSICGA GSPTSAHKPK  120
GIENPAPGGS SGSEQSDDEE SLEIEAGPCE QSTNVIDLKR MRRMVSNRES ARRSRKRKQA  180
HLADLELKVD QLRGENSSLF KQLTDANQQF DQAVTNNRIL RSDVETLRVK VKMAEDMVAR  240
GALTCSLDHL LQSHIGSPQY LNTRQPCRAS SDVLSTLDFQ GDDTCYTGMS AAGQVQSIAM  300
ENSQNKNGGI RSRLNHSSPL ESIASLENLQ NRPSSEITNC GADIWPWDSP PNAMSKQL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171177RRSRKRK
2171178RRSRKRKQ
3173178SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913776.10.0bZIP transcription factor RISBZ4 isoform X3
SwissprotQ6H5003e-83RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBLA0A2H3XCD70.0A0A2H3XCD7_PHODC; bZIP transcription factor RISBZ4 isoform X1
STRINGXP_008781732.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.16e-51basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]