PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010913805.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family SBP
Protein Properties Length: 468aa    MW: 50582 Da    PI: 8.6134
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010913805.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.56e-41179256178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +CqvegC++dls ak+yhr+h+vCe hsk+p v+v+g+e+rfCqqCsrfh+lsefD++krsCrrrL++hn+rrrk+q+
  XP_010913805.1 179 CCQVEGCNVDLSGAKDYHRKHRVCENHSKSPRVIVAGQERRFCQQCSRFHDLSEFDQKKRSCRRRLSDHNARRRKPQP 256
                     6**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.0E-33172241IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.59177254IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.68E-39178260IPR004333Transcription factor, SBP-box
PfamPF031104.6E-32180253IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MEWNTKTCSF WDWDNLALFS GNSKQEQQTN WKVEVKAAGG IDSGSVYSSV GGGSGGSGGG  60
GACSGSDLGY GSSSKSSISA SIDSSSKAGV KVSEFNFEGG NKDSMRVQDG GSSAAVVTAA  120
MSQEALIGLK LGKRTYFEDV CAGSNAKNLP SSSSSVSVVL PTGVVKKPRV TQQTVQSTCC  180
QVEGCNVDLS GAKDYHRKHR VCENHSKSPR VIVAGQERRF CQQCSRFHDL SEFDQKKRSC  240
RRRLSDHNAR RRKPQPDTIS FNSTRLSSPF YDDRQNFLWN PSPFGQMRST GTSTWEGSCD  300
FKVLQMKGSL MKSTKAGIVD GQLHLPNSQR SNTFSTLSHE VDRLLPLKGT PAEVLNHGLE  360
ASLTASNLDG ALDLRRALSL LSTNSWGSAD PGTTSSVVQL AHANHTSAAQ PTIHAVNSTS  420
EYWQDEHALA QQGRVLSVAA HRSGSQFQEF QLLKAPYETT FFDSNQIH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-271802531184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235252KKRSCRRRLSDHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913805.10.0squamosa promoter-binding-like protein 12
SwissprotQ5Z8181e-103SPL12_ORYSJ; Squamosa promoter-binding-like protein 12
TrEMBLA0A2H3XCK40.0A0A2H3XCK4_PHODC; squamosa promoter-binding-like protein 12
STRINGXP_008781704.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36973776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.37e-47squamosa promoter binding protein-like 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Liu Q, et al.
    The alteration in the architecture of a T-DNA insertion rice mutant osmtd1 is caused by up-regulation of MicroRNA156f.
    J Integr Plant Biol, 2015. 57(10): p. 819-29
    [PMID:25677853]