PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010913843.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 158aa    MW: 17329.4 Da    PI: 5.3428
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010913843.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-056991123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C + Fs++  L  H++ H
  XP_010913843.1 69 FSCNYCERKFSSSQALGGHQNAH 91
                    89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-46795IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.53E-66797No hitNo description
PfamPF139121.9E-56891IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.5936996IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MEEENTENGV MNGLELPSIG GDAVPLKQMK LKNFKHEARA LVELEAKTEE LNLDLGLEPS  60
SPPEPARVFS CNYCERKFSS SQALGGHQNA HKVERSMAKR NRGLGLAVRQ HAGPSHGEVA  120
RSVSVVLQRR EEEPAAASYA EVDDKGELAQ EIDLSLRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913843.11e-112zinc finger protein 4
TrEMBLA0A2H3XWB92e-50A0A2H3XWB9_PHODC; zinc finger protein 2-like
STRINGXP_008789729.14e-51(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.14e-19zinc finger protein 2